View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_high_4 (Length: 477)
Name: NF3936_high_4
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 44907855 - 44908318
Alignment:
| Q |
15 |
catgttttacttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaagcttgctaaaaaagacaagagaaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44907855 |
catgttttacttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaagcttgctaaaaaagacaagagaaag |
44907954 |
T |
|
| Q |
115 |
agtccacacacagttgcaaaatttgttgctgcaatcaagaggacaaagaagtacttagctaattatgttaggactttgactcatactgaagaatcagcac |
214 |
Q |
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| T |
44907955 |
agtccacacacagttgcaaaatttgttgctgcaatcaagaggacaaagaagtacttagctaattatgttaggactttgactcatactgaagaatcagcac |
44908054 |
T |
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| Q |
215 |
ttatggtgatgccaactaggcctaatggtggatttggaagaagatggaagagtgctataatgaagaggaacacaaaatttgttgtggctaagcaagagaa |
314 |
Q |
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| T |
44908055 |
ttatggtgatgccaactaggcctaatggtggatttggaagaagatggaagagtgctataatgaagaggaacacaaaatttgttgtggctaagcaagagaa |
44908154 |
T |
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| Q |
315 |
aatgtttctcacaaatggaaggtcttccatgccaaaaacagtagctcctgctttgtctggtgatcttgatggtttttctagtcctgttgtgtatcatttc |
414 |
Q |
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| T |
44908155 |
aatgtttctcacaaatggaaggtcttccatgccaaaaacagtagctcctgctttgtctggtgatcttgatggtttttctagtcctgttgtgtataatttc |
44908254 |
T |
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| Q |
415 |
caaaaggagcaaaagatg---------gatggtggtgatggtaataatgataatcatgatgatg |
469 |
Q |
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| T |
44908255 |
caaaaggagcaaaagatggatggagatgatggtggtgatggtaataatgataatcatgatgatg |
44908318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 22537670 - 22537599
Alignment:
| Q |
23 |
acttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaagcttg |
94 |
Q |
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|||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||||||||| |||| |
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| T |
22537670 |
acttcaaccacgagtttcttcaaagcatgggaatttcaatagccaaacacaggctagaaattctcaatcttg |
22537599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 2051722 - 2051633
Alignment:
| Q |
15 |
catgttttacttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaagcttgctaaaaaaga |
104 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||| |
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| T |
2051722 |
catggtttacttcaaccatgaatttctccaaagcatgggaatctccatagccaaacacaggctagaaattctcaaacttgcaagaaaaga |
2051633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 48069832 - 48069900
Alignment:
| Q |
21 |
ttacttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaa |
89 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
48069832 |
ttacttcaaccatgagtttctacaaagcatgggaatctcaatagccaaacacagactagagattctcaa |
48069900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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