View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3936_high_5 (Length: 440)

Name: NF3936_high_5
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3936_high_5
NF3936_high_5
[»] chr7 (13 HSPs)
chr7 (284-369)||(6173798-6173886)
chr7 (180-253)||(6174359-6174433)
chr7 (1-75)||(23093321-23093395)
chr7 (1-82)||(15303627-15303708)
chr7 (1-59)||(18369009-18369068)
chr7 (1-82)||(9866547-9866628)
chr7 (1-82)||(26134754-26134835)
chr7 (1-59)||(10587053-10587112)
chr7 (1-43)||(2563829-2563871)
chr7 (1-43)||(5108577-5108619)
chr7 (1-82)||(2504181-2504262)
chr7 (1-42)||(9130917-9130958)
chr7 (7-82)||(21227196-21227272)
[»] chr4 (6 HSPs)
chr4 (1-82)||(19900591-19900672)
chr4 (1-67)||(22218622-22218688)
chr4 (8-59)||(19636615-19636667)
chr4 (1-59)||(13128903-13128962)
chr4 (1-51)||(17709768-17709819)
chr4 (1-59)||(10107022-10107080)
[»] chr1 (4 HSPs)
chr1 (16-82)||(24306962-24307028)
chr1 (1-82)||(26540907-26540988)
chr1 (1-43)||(21847645-21847687)
chr1 (1-37)||(17121531-17121567)
[»] chr8 (11 HSPs)
chr8 (7-84)||(28317431-28317508)
chr8 (7-82)||(15292748-15292823)
chr8 (7-82)||(15473117-15473192)
chr8 (1-76)||(24119781-24119856)
chr8 (12-82)||(17972193-17972263)
chr8 (1-59)||(24269609-24269667)
chr8 (1-43)||(24644849-24644891)
chr8 (7-82)||(26008040-26008116)
chr8 (1-59)||(17101922-17101981)
chr8 (8-82)||(26615248-26615323)
chr8 (1-56)||(31288369-31288424)
[»] chr2 (7 HSPs)
chr2 (1-82)||(18539984-18540065)
chr2 (1-82)||(25070139-25070220)
chr2 (1-82)||(8447056-8447137)
chr2 (1-82)||(18553913-18553994)
chr2 (14-82)||(15454732-15454800)
chr2 (1-43)||(17349368-17349410)
chr2 (1-43)||(23011808-23011850)
[»] chr6 (7 HSPs)
chr6 (11-82)||(26215393-26215464)
chr6 (1-42)||(8039178-8039219)
chr6 (1-82)||(9385966-9386047)
chr6 (1-82)||(34478536-34478617)
chr6 (1-56)||(15466381-15466436)
chr6 (1-59)||(23645796-23645855)
chr6 (1-73)||(20722192-20722263)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-58)||(29918-29975)
[»] chr5 (9 HSPs)
chr5 (1-82)||(15544062-15544143)
chr5 (1-82)||(27921408-27921489)
chr5 (1-82)||(28253292-28253373)
chr5 (7-81)||(17185480-17185555)
chr5 (16-82)||(23014616-23014682)
chr5 (7-73)||(20534068-20534134)
chr5 (1-43)||(24267000-24267042)
chr5 (1-43)||(24343631-24343673)
chr5 (1-30)||(34487649-34487678)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-59)||(54871-54930)
[»] scaffold0957 (1 HSPs)
scaffold0957 (1-43)||(3164-3206)
[»] chr3 (4 HSPs)
chr3 (12-82)||(21074544-21074614)
chr3 (1-37)||(12752218-12752254)
chr3 (1-56)||(20429721-20429777)
chr3 (1-73)||(27542930-27543002)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-37)||(89905-89941)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 6173886 - 6173798
Alignment:
Q  284 aactctacttgatgaaccaaaatcctatgcttccttttgcaatattcacgagttgat----taatatactttgggatactctaactagtc 369  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||    ||||||||||||| |||||||||||||||    
T  6173886 aactctacttgatgaac-aaaatcctatgctgccttttgcaatattcatgagttgattaattaatatactttggaatactctaactagtc 6173798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 6174359 - 6174433
Alignment:
Q  180 ttgccagatgatcttttgctaataaaattgaagtatag-tttttgctaatatcagtaaacttatgattaaaaatt 253  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||| ||||    
T  6174359 ttgccggatgatcttttggtaataaaattgaagtatagttttttgctaatatcagtaaacttgttattaacaatt 6174433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23093321 - 23093395
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattca 75  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||   ||| ||||||| |||||||||||||||    
T  23093321 aaatcgtttactaagtaataaagtgtaagtagagtattgtatctacgtggattgtcgtttcaactaggcaattca 23093395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15303708 - 15303627
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| |||||||| ||||||||||||||||  ||||| ||||||| | | | |||||||||||||||| |||||||||||||    
T  15303708 aaatcgtttaccaggtaataaagtgtaagtaaagtatcgtatctacacgaattgtcgttccaactaggaaattcacgttact 15303627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18369068 - 18369009
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| |||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||    
T  18369068 aaatagtttaccaagtaataaagtgataagtagagtattgtatccatagggattgtcgtt 18369009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9866628 - 9866547
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||||||||||| ||||||||||||||| ||||||  |||| | |   | |||||||| |||||| ||||||||||||||    
T  9866628 aaattgtttaccaaataataaagtgtaagtagagtatcatatccacaataattgtcgttctaactagacaattcacgttact 9866547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26134835 - 26134754
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||||||||||||||| ||||||| |||||| ||||| | |  || |||| || ||||||| ||||||||||||||    
T  26134835 aaatcgtttaccaagtaataaaatgtaagtagagtatcgtatccacatagactgtcatttcaactagacaattcacgttact 26134754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10587112 - 10587053
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||||| ||||| |||||||    
T  10587112 aaatcgtttaccaagtaataaagtgataagtagagtatcgtatctacagggattgtcgtt 10587053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2563829 - 2563871
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    |||| ||||||||||||||||||||||||| |||||| |||||    
T  2563829 aaatcgtttaccaagtaataaagtgtaagtagagtatcgtatc 2563871  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5108577 - 5108619
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    ||||| |||||||||||||||||||||||| |||||| |||||    
T  5108577 aaattatttaccaagtaataaagtgtaagtagagtatcgtatc 5108619  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2504181 - 2504262
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||||||||||||||||||||||||| ||  | ||| ||||||| | ||| ||| |||||||  ||| || ||||||||||    
T  2504181 aaattgtttaccaagtaataaagtgtaggtatattatcgtatctacatggattgttgttccaatgaggaaactcacgttact 2504262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9130917 - 9130958
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtat 42  Q
    |||||||||| |||||||||||||||||||  ||||||||||    
T  9130917 aaattgtttatcaagtaataaagtgtaagtatagtattgtat 9130958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 21227196 - 21227272
Alignment:
Q  7 tttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||| ||||||||||||| ||||| |||||| ||||||| | | | | |||||| ||||||||||||| |||||||    
T  21227196 tttacaaagtaataaagtgataagtagagtatcgtatctacatgaattctcgttctaactaggcaattcgcgttact 21227272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19900591 - 19900672
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||||||||||||||||||||||||||| ||||||  |||  | |  || |||||||||||||||||||||||| |||||    
T  19900591 aaattgtttaccaagtaataaagtgtaagtagagtatcatattcacaaagattgtcgttccaactaggcaattcacattact 19900672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22218688 - 22218622
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactag 67  Q
    |||||||||| ||||||||||||||||||| |||||| ||||| |||  || ||| |||||||||||    
T  22218688 aaattgtttatcaagtaataaagtgtaagtagagtatcgtatccataaagattgttgttccaactag 22218622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 19636667 - 19636615
Alignment:
Q  8 ttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  19636667 ttacaaagtaataaagtggtaagtagagtattgtatctatagggattgtcgtt 19636615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13128962 - 13128903
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| ||||||||||||||||| || ||||| |||||||||||| ||||||| |||||||    
T  13128962 aaatcgtttaccaagtaataaaatgataagtagagtattgtatccatagggattgtcgtt 13128903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17709768 - 17709819
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctataggga 51  Q
    |||| |||||||||||||||||||| ||||| |||||||||||| |||||||    
T  17709768 aaatcgtttaccaagtaataaagtgataagtagagtattgtatccataggga 17709819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10107022 - 10107080
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| ||||||||||||||||| || |||| ||||||| |||| ||||||| |||||||    
T  10107022 aaatcgtttaccaagtaataaattgcaagtagagtattctatccatagggattgtcgtt 10107080  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 24307028 - 24306962
Alignment:
Q  16 taataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||||||||||||| |||||| ||||  ||||||| ||||||| |||||| |||||||||||||||    
T  24307028 taataaagtgtaagtagagtatcgtattcatagggattgtcgtttcaactaagcaattcacgttact 24306962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 26540907 - 26540988
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||||||||||||||||||||||| |||||| ||||| | | ||| | || |||||||||| |||||  |||||||    
T  26540907 aaatcgtttaccaagtaataaagtgtaagtagagtatcgtatccacaaggattatcattccaactagacaatttgcgttact 26540988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21847645 - 21847687
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||    
T  21847645 aaatcgtttaccaagtaataaagtctaagtagagtattgtatc 21847687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17121567 - 17121531
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtat 37  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  17121567 aaattgtttatcaagtaataaagtgtaagtagagtat 17121531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 28317431 - 28317508
Alignment:
Q  7 tttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttactca 84  Q
    |||||||||||||||||||||||| ||||||  |||| | | | | ||| ||| ||||||||||||||||||||||||    
T  28317431 tttaccaagtaataaagtgtaagtagagtatcatatcaacatgtattgttgtttcaactaggcaattcacgttactca 28317508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 15292748 - 15292823
Alignment:
Q  7 tttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||||||||||||||||||||| |||| | | ||  | | ||| ||||||||||| ||||||||||||||||||    
T  15292748 tttaccaagtaataaagtgtaagtagagtttcggattcacatggattgtcgttccaattaggcaattcacgttact 15292823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 15473117 - 15473192
Alignment:
Q  7 tttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||||||||||||||||||||| |||| | | ||  | | ||| ||||||||||| ||||||||||||||||||    
T  15473117 tttaccaagtaataaagtgtaagtagagtttcggattcacatggattgtcgttccaattaggcaattcacgttact 15473192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24119856 - 24119781
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcac 76  Q
    |||| ||||||||||| ||||||||||||| |||||||||||| | | ||| | |||||||||||| | |||||||    
T  24119856 aaatcgtttaccaagttataaagtgtaagtagagtattgtatccacatggattttcgttccaactaagaaattcac 24119781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 17972193 - 17972263
Alignment:
Q  12 caagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||||||||||||||||| |||||| |||||   | ||| |||| ||| |||||||||||||||||||||    
T  17972193 caagtaataaagtgtaagtagagtatcgtatccgcatggattgtcattctaactaggcaattcacgttact 17972263  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24269609 - 24269667
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgtt 59  Q
    ||||| |||||||||||||||||||||||| |||||| ||||| | ||||| |||||||    
T  24269609 aaattatttaccaagtaataaagtgtaagtagagtatcgtatccacagggattgtcgtt 24269667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24644849 - 24644891
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    ||||| |||||||||||||||||||||||| ||||||||||||    
T  24644849 aaattatttaccaagtaataaagtgtaagtagagtattgtatc 24644891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 26008040 - 26008116
Alignment:
Q  7 tttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||||||||||||||||| ||||| |||||| ||||| | ||||| |||| ||||||||||  ||||| |||||||    
T  26008040 tttaccaagtaataaagtgataagtagagtatggtatcaagagggattgtcattccaactagaaaattcgcgttact 26008116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17101981 - 17101922
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||| ||||||| |||||||    
T  17101981 aaatcgtttaccaagtaataaagtgataagtagagtatcgtatccatagggattgtcgtt 17101922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 26615323 - 26615248
Alignment:
Q  8 ttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||||| |||||||||| ||||| |||||||||||| ||| | | ||||||| ||| || |||||||||||||||    
T  26615323 ttaccaactaataaagtgataagtagagtattgtatccatatgaattgtcgtttcaattaagcaattcacgttact 26615248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31288369 - 31288424
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtc 56  Q
    |||| |||||||||||||||||||||||||  ||||| ||||| ||||||| ||||    
T  31288369 aaatcgtttaccaagtaataaagtgtaagtaaagtatcgtatccatagggattgtc 31288424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18540065 - 18539984
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||||||| |||||| | |||||||||| ||||||  ||| |||||||| || |||| ||||||||||||||| ||||||    
T  18540065 aaattgtttatcaagtagtgaagtgtaagtagagtatcatatttatagggattgacgtttcaactaggcaattcaagttact 18539984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25070139 - 25070220
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||| ||| ||||||||||||||| |||||| | ||| | | ||| ||||||||||||||| ||||||||||||||    
T  25070139 aaatcgtttatcaaataataaagtgtaagtagagtatcgcatccacaaggattgtcgttccaactagacaattcacgttact 25070220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8447137 - 8447056
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||||||||||||||||| ||||| || ||| ||||| | | ||| ||||||||||||||| ||| || |||||||    
T  8447137 aaatcgtttaccaagtaataaagtataagtagattatcgtatccacatggattgtcgttccaactagacaactcgcgttact 8447056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18553994 - 18553913
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||| ||| |||||| |||||| ||| | ||||||  |||||| ||||| |||| |||||||||| ||||||||||||||    
T  18553994 aaattggttatcaagtagtaaagtataattagagtatcatatctacagggattgtcattccaactagacaattcacgttact 18553913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 15454732 - 15454800
Alignment:
Q  14 agtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||||||||||||||| ||||||  |||| || | || |||| |||||||||||||||||| ||||||    
T  15454732 agtaataaagtgtaagtagagtatcatatccatcgagattgtcattccaactaggcaattcatgttact 15454800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17349368 - 17349410
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    |||| ||||||||||||||||||||||||| |||||| |||||    
T  17349368 aaatcgtttaccaagtaataaagtgtaagtagagtatcgtatc 17349410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23011850 - 23011808
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    ||||| |||||||||||||||||||||||| || |||||||||    
T  23011850 aaattttttaccaagtaataaagtgtaagtagattattgtatc 23011808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 26215464 - 26215393
Alignment:
Q  11 ccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||||||||||||| |||||| ||||| |||  || ||||||| ||| ||||||||||||||||||    
T  26215464 ccaaataataaagtgtaagtagagtatcgtatccatatagattgtcgtttcaattaggcaattcacgttact 26215393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8039219 - 8039178
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtat 42  Q
    |||| |||||||||||||||||||||||||||||||| ||||    
T  8039219 aaatcgtttaccaagtaataaagtgtaagtggagtatcgtat 8039178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9385966 - 9386047
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||| |||||||||||||||||| |||| ||||   ||||| | | ||| ||||||| |||||||||||||||| |||||    
T  9385966 aaattggttaccaagtaataaagtgcaagtagagtcgcgtatccacatggattgtcgtttcaactaggcaattcacattact 9386047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34478536 - 34478617
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||||||| ||||||||||||||| |||||| ||||| | | ||| || | || ||||||||||||||| ||||||    
T  34478536 aaatcgtttaccaaataataaagtgtaagtagagtatcgtatccacaaggattgacatttcaactaggcaattcatgttact 34478617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15466381 - 15466436
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtc 56  Q
    |||| |||||||||||||||||||||| || |||||| ||||| ||||||| ||||    
T  15466381 aaatcgtttaccaagtaataaagtgtacgtagagtatcgtatcaatagggattgtc 15466436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23645855 - 23645796
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||| ||||||| |||||||    
T  23645855 aaatcgtttaccaagtaataaagtgataagtagagtatcgtatccatagggattgtcgtt 23645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20722263 - 20722192
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaatt 73  Q
    |||| ||||||||||||||||||| ||||| ||||||  |||| | | ||| |||| ||||||||||||||||    
T  20722263 aaatcgtttaccaagtaataaagt-taagtagagtataatatccacaaggattgtctttccaactaggcaatt 20722192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29918 - 29975
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgt 58  Q
    |||| ||||||||||||||||||||||||| |||||| ||||| |||| || ||||||    
T  29918 aaatcgtttaccaagtaataaagtgtaagtagagtatggtatccatagagattgtcgt 29975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15544062 - 15544143
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||||||||||||||| ||| ||| |||||| ||||  ||||||| | |||||| ||||||||||| | |||||||    
T  15544062 aaatcgtttaccaagtaataaactgtcagtagagtatcgtatacatagggattatcgttcaaactaggcaatccgcgttact 15544143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27921489 - 27921408
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||||||  ||||||||||||||||||| | |||| |||| || | ||  ||| ||| ||||||||||||||||||||||    
T  27921489 aaattgtttgtcaagtaataaagtgtaagtagtgtatcgtatatacatgggttgttgtttcaactaggcaattcacgttact 27921408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28253292 - 28253373
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||| ||||||||||||||||||||||||| || ||| ||||  | ||||| | ||||||||| |||| ||||| |||||||    
T  28253292 aaatcgtttaccaagtaataaagtgtaagtagaatatcgtattcacagggattatcgttccaagtaggaaattcgcgttact 28253373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 17185480 - 17185555
Alignment:
Q  7 tttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttac 81  Q
    |||||||| |||||||||| ||||| |||||| ||||||| ||||| ||||||| |||| |  |||||||||||||    
T  17185480 tttaccaaataataaagtgataagtagagtatcgtatctacagggattgtcgtttcaaccaaacaattcacgttac 17185555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23014682 - 23014616
Alignment:
Q  16 taataaagtg-taagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    |||||||||| ||||| ||||||||||||  || ||| ||||||| ||||||||||||||||||||||    
T  23014682 taataaagtgataagtagagtattgtatcc-taaggattgtcgtttcaactaggcaattcacgttact 23014616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 20534134 - 20534068
Alignment:
Q  7 tttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaatt 73  Q
    ||||||||||||||||||||||||  ||||| ||||   |||||| | |||||||||||| ||||||    
T  20534134 tttaccaagtaataaagtgtaagtaaagtatcgtatgcctagggattttcgttccaactacgcaatt 20534068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24267042 - 24267000
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    |||| ||||||||||||||||||||||||| |||||| |||||    
T  24267042 aaatcgtttaccaagtaataaagtgtaagtagagtatcgtatc 24267000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24343673 - 24343631
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    |||| ||||||||||||||||||||||||| |||||| |||||    
T  24343673 aaatcgtttaccaagtaataaagtgtaagtagagtatcgtatc 24343631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34487649 - 34487678
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagt 30  Q
    ||||||||||||||||||||||||||||||    
T  34487649 aaattgtttaccaagtaataaagtgtaagt 34487678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 54871 - 54930
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtcgtt 59  Q
    |||| |||||||||||||||||||| ||||| |||||||||||| | ||||| |||||||    
T  54871 aaatcgtttaccaagtaataaagtgataagtagagtattgtatccacagggattgtcgtt 54930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3164 - 3206
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatc 43  Q
    ||||||||||||||||||||||||||| || |||||| |||||    
T  3164 aaattgtttaccaagtaataaagtgtatgtagagtatcgtatc 3206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 21074614 - 21074544
Alignment:
Q  12 caagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaattcacgttact 82  Q
    ||||||||||||||||||| |||||| ||||| |   | | |||||||||||||| | |||||||||||||    
T  21074614 caagtaataaagtgtaagtagagtatcgtatccaccagaattgtcgttccaactatgtaattcacgttact 21074544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12752218 - 12752254
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtat 37  Q
    |||| |||||||||||||| |||||||||||||||||    
T  12752218 aaatcgtttaccaagtaatgaagtgtaagtggagtat 12752254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20429721 - 20429777
Alignment:
Q  1 aaattgtttaccaagtaataaagtg-taagtggagtattgtatctatagggaatgtc 56  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||| ||| ||||    
T  20429721 aaattgtttaccaagtaataaaatgataagtagagtatcgtatctataaggattgtc 20429777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27543002 - 27542930
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtattgtatctatagggaatgtcgttccaactaggcaatt 73  Q
    |||| |||||||||| |||||||| ||||| |||||| ||||| | | | | ||| |||||||||||||||||    
T  27543002 aaatcgtttaccaagaaataaagtataagtagagtatcgtatccacatgaattgttgttccaactaggcaatt 27542930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 89941 - 89905
Alignment:
Q  1 aaattgtttaccaagtaataaagtgtaagtggagtat 37  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  89941 aaatcgtttaccaagtaataaagtgtaagtagagtat 89905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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