View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3936_high_8 (Length: 330)

Name: NF3936_high_8
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3936_high_8
NF3936_high_8
[»] chr1 (4 HSPs)
chr1 (11-316)||(11684341-11684646)
chr1 (11-316)||(11676604-11676909)
chr1 (16-312)||(11629136-11629432)
chr1 (16-306)||(11637905-11638195)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 11684646 - 11684341
Alignment:
Q  11 cagagagaagctgttaatcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatgttttccggagaggtcactaatattc 110  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||    
T  11684646 cagagaaaagttgttaatcaactgaacacaatactaactgattcaatgaaggcacacgaggttttggacttgatgttttctggagaggtcgctaatattc 11684547  T
Q  111 tgaaggagatgcttatatgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgaca 210  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11684546 tgaaggatatgcttatttgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgaca 11684447  T
Q  211 aagaactagaatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatggtgaagtttttgttcaatattccaac 310  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11684446 aagaactaggatatttattccgaaaggaagaacaatgatgggtgttctagatgaaactagaaccctagaatatggtgaagtttttgttcaatattccaac 11684347  T
Q  311 aaaagg 316  Q
    ||||||    
T  11684346 aaaagg 11684341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 11676909 - 11676604
Alignment:
Q  11 cagagagaagctgttaatcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatgttttccggagaggtcactaatattc 110  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||    
T  11676909 cagagaaaagttgttaatcaactgaacacaatactaactgattcaatgaaggcacacgaggttttggacttgatgttttctggagaggtcgctaatattc 11676810  T
Q  111 tgaaggagatgcttatatgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgaca 210  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11676809 tgaaggatatgcttatttgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgaca 11676710  T
Q  211 aagaactagaatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatggtgaagtttttgttcaatattccaac 310  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||    
T  11676709 aagaactaggatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaaccctagaatatggtgaagtttttgttcaatattctcac 11676610  T
Q  311 aaaagg 316  Q
    ||||||    
T  11676609 aaaagg 11676604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 11629136 - 11629432
Alignment:
Q  16 agaagctgttaatcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatgttttccggagaggtcactaatattctgaag 115  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  11629136 agaagctgttgatcaactgaacacaatactaactgattcgacaaaggcacacgaggttttggacttgatgtcttccggggaggtcactaatattctgaag 11629235  T
Q  116 gagatgcttatatgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgacaaagaa 215  Q
    ||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| || ||  | || |||||||| |||| ||    
T  11629236 gagatgcttatttgtggttacaagcctaatgttgaaccatttctttcaatgatgctgcagacatttagggcctcgaaacttttggaattgcggcaaaaaa 11629335  T
Q  216 ctagaatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatggtgaagtttttgttcaatattccaacaa 312  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  11629336 ctaggatatttattccaaaaggaagagcaatgatgggagttctagatgaaactagaaccctagaatatggtgaagtttttgttcaatattctaacaa 11629432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 11637905 - 11638195
Alignment:
Q  16 agaagctgttaatcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatgttttccggagaggtcactaatattctgaag 115  Q
    ||||||||||| |||||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||| |||||| || |||||||||||||| |||    
T  11637905 agaagctgttactcaactgaacacgatactaacagattcaactaaggcacatgaggttttggacttgatgtgttccggtgaagtcactaatattctcaag 11638004  T
Q  116 gagatgcttatatgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgacaaagaa 215  Q
    ||||||||||| ||||||||||||||| || | || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||    
T  11638005 gagatgcttatctgtggctacaagcctgatgttgagccatttctttcaatgatgctgcagacatttagggcatcaaagttgttggaattgcgacaaaaaa 11638104  T
Q  216 ctagaatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatggtgaagtttttgttcaatattc 306  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  11638105 ctaggatatttattccaaaaggaagagcaatgatgggagttctagatgaaactagaaccttagaatatggggaagtttttgttcaatattc 11638195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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