View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_low_1 (Length: 690)
Name: NF3936_low_1
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 448 - 638
Target Start/End: Complemental strand, 35967079 - 35966889
Alignment:
| Q |
448 |
ttatcattttctatcctacttagattaacggtgagtttgaaggaattatgatgtctttctataattttttgacaaaactaacatttcaacttaatcacat |
547 |
Q |
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| T |
35967079 |
ttatgattttctatcctacttaaattaacggtgagtttgacggaattatgatatttttctataattttttgacaaaactaacatttcaacttaatcaaat |
35966980 |
T |
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| Q |
548 |
tatcgctttaatctctttcgtcaattatattatattttaaacattttgacatgtcaaannnnnnngggtatgaaatgtgctccttttgtaa |
638 |
Q |
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| T |
35966979 |
tatcgctttaatctctttcgtcaattatattatattttaaacattttgacatgtcaaatttttttgggtatgaaatgtgctccttttgtaa |
35966889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 35967650 - 35967488
Alignment:
| Q |
103 |
tatttttccagtatatgtatgtaagagagaaaaggaattttgttgtgtttgaaaaatattgtgacagaagagaagatgcaaccacaaccagactcatgtg |
202 |
Q |
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| T |
35967650 |
tatttttccagtatatgtatgtaagagagagaaggaattttgttgtgtttgaaaaatattgtgacagaagagaagatgcaaccacaaccagactgatgtg |
35967551 |
T |
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| Q |
203 |
ctacttttctctaaaataaagtttttattataataaactctaattgcaatttatcacgtgact |
265 |
Q |
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| T |
35967550 |
ctacttttctcaaacataaagtttttattataataaactctaattgcaatttgtcacgtgact |
35967488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 276 - 456
Target Start/End: Complemental strand, 35967280 - 35967098
Alignment:
| Q |
276 |
atgcacgtggaaaatgttgaatgatcaatcaataaacacacattccataactacagcctttcgctttcagctttgtattctttttcttgtgttataa--t |
373 |
Q |
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| T |
35967280 |
atgcacgtggaaaatgttgaatgatcaatcaataaacacacattccaaaactacagcctttcgctttcagctttgtattctttttcttgtgttataactt |
35967181 |
T |
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| Q |
374 |
acctgttttgtttatatagattctttaatctttataggttaacgtttcttttttgtgcatagattttacaatttttatcattt |
456 |
Q |
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| T |
35967180 |
ataatacctgtttatatagattctttaatctttataggttaacgtttcttttttgtgcatagattttacaatttttatcattt |
35967098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 35967711 - 35967669
Alignment:
| Q |
62 |
ctacttaaattagtggtcattttcaaccattaatagagggata |
104 |
Q |
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| T |
35967711 |
ctacttaaattagtggtcattttcaaccattaatagagggata |
35967669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 674
Target Start/End: Complemental strand, 35962243 - 35962193
Alignment:
| Q |
627 |
ctccttttgtaataccaatgtgtt---aataacaaagttggaattggcttg |
674 |
Q |
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| T |
35962243 |
ctccttttgtaataccaatgtgttgttaataacaaagttggaattggcttg |
35962193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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