View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_low_19 (Length: 236)
Name: NF3936_low_19
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41516880 - 41517107
Alignment:
| Q |
1 |
aacctgcaaataagttgtttatccaaagactttgttggggtgttccctcctttggtttaggtcccttttgatttacttatttgagcttacctactcacat |
100 |
Q |
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| T |
41516880 |
aacctgcaaataagttgtttatccaaagactttattggggtgttccctcctttggtttaggtcccttttgattgacttatttgagcttacctactcacat |
41516979 |
T |
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| Q |
101 |
aaatgtttgcgagaaacagcttatgacatatctattagttgttttaagcttttctatctaagctctctgggatagcttatcaaaacagtta-------at |
193 |
Q |
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| T |
41516980 |
aaatgtttgcgacaaacagcttatgacatatctataagttgttttaagcttttctatccaagctctctgggatagcttatcaaaacagttaattgcttat |
41517079 |
T |
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| Q |
194 |
atgaattgaaaacagttgactttatttt |
221 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41517080 |
atgaattgaaaacagttgactttatttt |
41517107 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 54180768 - 54180844
Alignment:
| Q |
112 |
agaaacagcttatgacatatctattagttgttttaagcttttctatctaagctctctgggatagcttatcaaaacag |
188 |
Q |
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|||||||||||||||||| || || ||||||||| ||||| | ||| ||||||||| ||||||||| ||||||| |
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| T |
54180768 |
agaaacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacag |
54180844 |
T |
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