View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_low_2 (Length: 544)
Name: NF3936_low_2
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 54986562 - 54986991
Alignment:
| Q |
10 |
gcacagagtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986562 |
gcacagagtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaa |
54986661 |
T |
|
| Q |
110 |
tctcggttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgcaatcctcggcaccttcctctattc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986662 |
tctcggttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgcaatcctcggcaccttcctctattc |
54986761 |
T |
|
| Q |
210 |
acaggtgcattcctttttccttctatttttgttttcttattaagtataaccattcactattttttatgttcgttcattttacatatacatgtgcaacatg |
309 |
Q |
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| T |
54986762 |
acaggtgcattcc-ttttccttctatttttgttttcttattaagtataaccattcactattttttatgctcgttcattttatatatacatgtgca----- |
54986855 |
T |
|
| Q |
310 |
tgcgtgcgcgcacgtgtgtcaaaaataaaactatatttctcaatacttgagaccaaactaatctgtttgtttctttttaattatttctacaggccaaaca |
409 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54986856 |
------cgcgcacgtgtgtcaacaataaaactatatttctcaatacttgtgacgaaactaatctgtttgttactttttaattatttctacaggccaaaca |
54986949 |
T |
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| Q |
410 |
gtaatgtgtagtttagaagctgctatatctatatgcaagaca |
451 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
54986950 |
gtaatgactagtttagaagctgctatatctatatgcaagaca |
54986991 |
T |
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Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 7883891 - 7884096
Alignment:
| Q |
16 |
agtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctcgg |
115 |
Q |
| |
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||||||||||| || || || |||||||| || || |||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| || | |
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| T |
7883891 |
agtgtgttctaccatttatataatcaagtgtcatacatgtctcttgatcagatttctcccttaacatttagcataggaaatacaatgaagagaatttctg |
7883990 |
T |
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| Q |
116 |
ttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgcaatcctcggcaccttcctctattcacaggt |
215 |
Q |
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| T |
7883991 |
taatagtctcttccatcattatctttcacacaccacttcaacccatcaatgctcttggagctgccattgcaattcttggcaccttcatctattcacaggt |
7884090 |
T |
|
| Q |
216 |
gcattc |
221 |
Q |
| |
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| |||| |
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|
| T |
7884091 |
gaattc |
7884096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 18397690 - 18397862
Alignment:
| Q |
13 |
cagagtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatct |
112 |
Q |
| |
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|||||| | |||||||| | |||||||| || ||||| ||||| ||||| |||| ||||| ||||||||||||| || ||||| ||||| | || | |
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| T |
18397690 |
cagagtatattctatcatctatacaatcaggtgtcttacatgtcgttggatgagatctctcccctaacatttagcattggaaacaccatgaaacgtatat |
18397789 |
T |
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| Q |
113 |
cggttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgc |
185 |
Q |
| |
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| || || || ||||| || || |||||||| |||||||||||||| |||||| ||||| || |||||||| |
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| T |
18397790 |
ctgtcatagtatcttcaattatcatcttccatacaccaattcagcctgtcaatgctcttggagccgcaattgc |
18397862 |
T |
|
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