View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3936_low_3 (Length: 479)
Name: NF3936_low_3
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3936_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 155 - 377
Target Start/End: Complemental strand, 44172505 - 44172284
Alignment:
| Q |
155 |
gttaaagtttgaaactttaatctttgatacatattttaaaataggaaacttggacaacattttaaggaacnnnnnnnnnnnnttctttttgtttcccatt |
254 |
Q |
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| T |
44172505 |
gttaaagtttgaaactttaatctttgatacatattttaaaataggaaacttggacaacattttaaggaacaaaaaaaaata-ttctttttgtttcccatt |
44172407 |
T |
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| Q |
255 |
tttatgttgctgaaatgaagagacgaccatgtatgtatgttgtaattgtttgtcttgtcttgannnnnnngttattattttcggcaatgtttgttgtgtt |
354 |
Q |
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| T |
44172406 |
tttatgttgctgaaatgaagagacgaccatgtatgtatgttgtaattgtttgtcttgtcttggtttttttgttattatttttggcaatgtttgttgtgtt |
44172307 |
T |
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| Q |
355 |
ctttccaaaatttgacatccaaa |
377 |
Q |
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| T |
44172306 |
ctttccaaaatttgacatccaaa |
44172284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 44172656 - 44172538
Alignment:
| Q |
1 |
agcacagatctcaggtcattttttcgtacccaaatctatcaaagcaaagacacattttttatcaactttattctgggtgggtttctgggttattctgatt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44172656 |
agcatagatctcaggtcattttttcgtacccaaatctatcaaagcaaagacacattttttatcaactttattctgggtgggtttctgggttattctgatt |
44172557 |
T |
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| Q |
101 |
tgggtttgtgataaaatga |
119 |
Q |
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| T |
44172556 |
tgggtttgtgataaaatga |
44172538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 44172232 - 44172194
Alignment:
| Q |
429 |
aattaacataaagttcaagggtttctattgttctatgtg |
467 |
Q |
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| T |
44172232 |
aattaacataaagttcaagggtttctattgttctatgtg |
44172194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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