View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3936_low_9 (Length: 321)

Name: NF3936_low_9
Description: NF3936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3936_low_9
NF3936_low_9
[»] chr2 (29 HSPs)
chr2 (20-321)||(31456638-31456936)
chr2 (19-76)||(35447883-35447940)
chr2 (24-87)||(21091718-21091781)
chr2 (23-74)||(23406876-23406927)
chr2 (24-87)||(42832277-42832340)
chr2 (20-87)||(44860315-44860382)
chr2 (20-74)||(13273015-13273069)
chr2 (19-124)||(24975321-24975431)
chr2 (25-87)||(31808072-31808134)
chr2 (19-75)||(12668419-12668475)
chr2 (37-87)||(1327973-1328023)
chr2 (22-76)||(2423875-2423929)
chr2 (19-81)||(18420430-18420492)
chr2 (36-74)||(34331395-34331433)
chr2 (23-84)||(2438719-2438780)
chr2 (19-76)||(6290163-6290219)
chr2 (19-72)||(13204035-13204088)
chr2 (21-82)||(20539672-20539733)
chr2 (29-82)||(21374705-21374758)
chr2 (37-82)||(21782832-21782877)
chr2 (19-64)||(32749821-32749866)
chr2 (23-76)||(34691805-34691858)
chr2 (23-76)||(34714217-34714270)
chr2 (29-82)||(39323264-39323317)
chr2 (20-64)||(15909629-15909673)
chr2 (23-82)||(18589198-18589255)
chr2 (19-75)||(18622613-18622669)
chr2 (19-87)||(19614178-19614246)
chr2 (23-75)||(38442314-38442366)
[»] chr8 (21 HSPs)
chr8 (19-124)||(21465370-21465475)
chr8 (25-106)||(40332167-40332248)
chr8 (31-115)||(14731679-14731763)
chr8 (31-87)||(11803254-11803310)
chr8 (19-82)||(14634137-14634200)
chr8 (20-87)||(25566836-25566903)
chr8 (23-77)||(3025556-3025610)
chr8 (23-122)||(4786338-4786445)
chr8 (24-82)||(12606830-12606888)
chr8 (23-82)||(13844596-13844655)
chr8 (19-82)||(22651976-22652039)
chr8 (19-82)||(24362198-24362261)
chr8 (36-82)||(29776036-29776082)
chr8 (78-124)||(43737882-43737928)
chr8 (30-83)||(12570515-12570568)
chr8 (19-84)||(25172694-25172759)
chr8 (76-124)||(16642033-16642081)
chr8 (30-82)||(25192354-25192406)
chr8 (30-82)||(27213547-27213599)
chr8 (30-82)||(31236584-31236636)
chr8 (30-82)||(34897085-34897137)
[»] chr7 (33 HSPs)
chr7 (31-124)||(8160374-8160467)
chr7 (18-84)||(18013069-18013135)
chr7 (19-84)||(7758320-7758385)
chr7 (19-124)||(9778452-9778563)
chr7 (29-125)||(25239709-25239805)
chr7 (16-82)||(5235986-5236052)
chr7 (24-100)||(24146798-24146874)
chr7 (19-82)||(5548676-5548739)
chr7 (19-82)||(13770691-13770754)
chr7 (19-82)||(32308120-32308183)
chr7 (24-82)||(22484025-22484083)
chr7 (18-75)||(21140977-21141034)
chr7 (23-76)||(21880158-21880211)
chr7 (19-79)||(7328687-7328747)
chr7 (22-82)||(19992001-19992061)
chr7 (30-74)||(27732246-27732290)
chr7 (19-125)||(11890915-11891022)
chr7 (30-81)||(12278836-12278887)
chr7 (19-82)||(24339642-24339705)
chr7 (23-82)||(28155570-28155629)
chr7 (23-77)||(3721098-3721152)
chr7 (36-82)||(10377507-10377553)
chr7 (24-82)||(19206050-19206108)
chr7 (19-124)||(26033457-26033556)
chr7 (81-122)||(1885519-1885560)
chr7 (22-75)||(3991331-3991384)
chr7 (92-125)||(5409919-5409952)
chr7 (25-74)||(23849460-23849509)
chr7 (30-74)||(8239057-8239101)
chr7 (89-125)||(17851374-17851410)
chr7 (23-87)||(19213798-19213862)
chr7 (23-87)||(20549786-20549850)
chr7 (38-82)||(30813812-30813856)
[»] scaffold0008 (1 HSPs)
scaffold0008 (19-81)||(263368-263430)
[»] chr3 (28 HSPs)
chr3 (19-81)||(8039831-8039893)
chr3 (23-82)||(8383257-8383316)
chr3 (19-87)||(11313796-11313864)
chr3 (78-126)||(14747509-14747557)
chr3 (19-74)||(16789020-16789075)
chr3 (19-81)||(30994878-30994940)
chr3 (23-87)||(7614415-7614479)
chr3 (19-75)||(14209120-14209176)
chr3 (20-75)||(17005616-17005671)
chr3 (77-124)||(25093446-25093493)
chr3 (37-87)||(11251973-11252023)
chr3 (30-125)||(15864788-15864885)
chr3 (21-83)||(21256984-21257046)
chr3 (20-78)||(28678307-28678365)
chr3 (30-84)||(34307787-34307841)
chr3 (23-81)||(45451554-45451612)
chr3 (22-87)||(1509534-1509599)
chr3 (79-124)||(3164095-3164140)
chr3 (31-123)||(17568691-17568784)
chr3 (19-76)||(25948883-25948940)
chr3 (23-76)||(49505154-49505207)
chr3 (84-124)||(7171446-7171486)
chr3 (23-87)||(7928445-7928509)
chr3 (36-88)||(9624635-9624687)
chr3 (31-74)||(15505798-15505842)
chr3 (76-124)||(24205108-24205156)
chr3 (30-74)||(25892468-25892512)
chr3 (23-87)||(51206353-51206417)
[»] scaffold0122 (1 HSPs)
scaffold0122 (18-82)||(8666-8730)
[»] chr1 (31 HSPs)
chr1 (30-123)||(3490397-3490498)
chr1 (19-82)||(5376496-5376559)
chr1 (30-76)||(8010294-8010340)
chr1 (19-84)||(1486705-1486770)
chr1 (19-76)||(21038089-21038146)
chr1 (19-80)||(34712379-34712440)
chr1 (19-75)||(7918207-7918263)
chr1 (19-82)||(9629896-9629959)
chr1 (58-109)||(29229434-29229485)
chr1 (78-124)||(17831594-17831640)
chr1 (25-74)||(22907341-22907390)
chr1 (19-72)||(25361896-25361949)
chr1 (23-84)||(39130767-39130828)
chr1 (19-87)||(17754306-17754374)
chr1 (31-75)||(35999330-35999374)
chr1 (19-87)||(38503315-38503383)
chr1 (23-87)||(40181866-40181930)
chr1 (31-82)||(13436458-13436509)
chr1 (23-74)||(21530697-21530748)
chr1 (20-79)||(37055853-37055912)
chr1 (23-82)||(41877470-41877529)
chr1 (19-74)||(47989505-47989560)
chr1 (23-74)||(52903257-52903308)
chr1 (23-81)||(5927340-5927398)
chr1 (78-124)||(22881679-22881725)
chr1 (36-74)||(28674808-28674846)
chr1 (24-82)||(36878461-36878519)
chr1 (30-87)||(52284697-52284755)
chr1 (19-76)||(5944287-5944346)
chr1 (19-76)||(31694706-31694765)
chr1 (20-83)||(48148034-48148098)
[»] chr6 (32 HSPs)
chr6 (19-82)||(7723246-7723309)
chr6 (19-82)||(9025490-9025553)
chr6 (19-82)||(12696324-12696387)
chr6 (31-84)||(32511674-32511727)
chr6 (23-82)||(7996378-7996437)
chr6 (23-82)||(8022364-8022423)
chr6 (36-81)||(8389485-8389530)
chr6 (31-72)||(17411876-17411917)
chr6 (23-87)||(28715290-28715354)
chr6 (36-125)||(33817900-33817995)
chr6 (20-68)||(34197125-34197173)
chr6 (20-71)||(7973665-7973716)
chr6 (23-82)||(7977830-7977889)
chr6 (19-82)||(8931598-8931661)
chr6 (31-74)||(14721249-14721292)
chr6 (19-82)||(16766697-16766760)
chr6 (23-82)||(19040352-19040411)
chr6 (23-82)||(21924935-21924994)
chr6 (19-82)||(26562689-26562752)
chr6 (20-75)||(31384927-31384982)
chr6 (19-74)||(34895030-34895085)
chr6 (20-82)||(3398619-3398680)
chr6 (23-81)||(7265593-7265651)
chr6 (24-82)||(7938116-7938174)
chr6 (36-82)||(9658879-9658925)
chr6 (19-80)||(7086797-7086858)
chr6 (78-123)||(7377930-7377975)
chr6 (25-82)||(13364707-13364764)
chr6 (19-76)||(20576629-20576686)
chr6 (84-124)||(1681702-1681742)
chr6 (19-75)||(9522898-9522954)
chr6 (84-124)||(32299219-32299259)
[»] chr5 (21 HSPs)
chr5 (20-124)||(6471886-6471996)
chr5 (23-84)||(32630735-32630796)
chr5 (19-84)||(39698539-39698604)
chr5 (27-83)||(25817494-25817550)
chr5 (20-81)||(36838544-36838605)
chr5 (30-74)||(25863212-25863256)
chr5 (19-87)||(41091253-41091321)
chr5 (19-82)||(3966503-3966566)
chr5 (31-82)||(15410456-15410507)
chr5 (19-82)||(18592073-18592136)
chr5 (19-82)||(39205880-39205943)
chr5 (31-82)||(43001800-43001851)
chr5 (49-87)||(2236811-2236848)
chr5 (23-82)||(15382477-15382538)
chr5 (24-74)||(23287350-23287400)
chr5 (23-87)||(6770538-6770600)
chr5 (19-81)||(25888289-25888353)
chr5 (30-74)||(7997173-7997217)
chr5 (24-76)||(12927660-12927712)
chr5 (19-75)||(21542037-21542093)
chr5 (38-82)||(27932235-27932279)
[»] scaffold0049 (2 HSPs)
scaffold0049 (19-72)||(56932-56985)
scaffold0049 (24-81)||(63774-63831)
[»] chr4 (24 HSPs)
chr4 (31-124)||(37203222-37203315)
chr4 (19-79)||(30838213-30838273)
chr4 (23-106)||(54580023-54580107)
chr4 (19-82)||(56257933-56257994)
chr4 (30-124)||(3144659-3144753)
chr4 (30-83)||(1213228-1213280)
chr4 (19-80)||(35952613-35952674)
chr4 (24-76)||(847957-848009)
chr4 (19-124)||(19312289-19312398)
chr4 (30-82)||(26504306-26504358)
chr4 (23-87)||(35161031-35161095)
chr4 (19-87)||(51701253-51701321)
chr4 (19-82)||(3947762-3947825)
chr4 (25-100)||(7727961-7728036)
chr4 (23-82)||(8423718-8423777)
chr4 (19-82)||(13134450-13134513)
chr4 (23-82)||(23292986-23293045)
chr4 (36-75)||(37698719-37698758)
chr4 (23-82)||(38847012-38847071)
chr4 (36-75)||(49652985-49653024)
chr4 (37-74)||(20179364-20179401)
chr4 (19-76)||(30982874-30982931)
chr4 (23-87)||(2361975-2362039)
chr4 (76-124)||(10499336-10499383)
[»] scaffold0024 (1 HSPs)
scaffold0024 (22-74)||(68241-68293)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-87)||(135308-135376)
[»] scaffold0223 (1 HSPs)
scaffold0223 (19-82)||(20172-20235)
[»] scaffold0004 (1 HSPs)
scaffold0004 (27-82)||(92807-92862)
[»] scaffold0136 (1 HSPs)
scaffold0136 (20-74)||(3846-3900)
[»] scaffold1528 (1 HSPs)
scaffold1528 (19-87)||(1030-1098)
[»] scaffold1300 (1 HSPs)
scaffold1300 (87-123)||(540-576)
[»] scaffold0697 (1 HSPs)
scaffold0697 (23-74)||(1652-1703)
[»] scaffold0044 (1 HSPs)
scaffold0044 (19-73)||(53189-53243)
[»] scaffold0376 (1 HSPs)
scaffold0376 (22-87)||(6307-6372)
[»] scaffold0188 (1 HSPs)
scaffold0188 (76-124)||(9484-9532)
[»] scaffold0171 (1 HSPs)
scaffold0171 (22-54)||(23539-23571)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 31456638 - 31456936
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgctt 119  Q
    |||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||   |    
T  31456638 acacgaaactgatacttataattacactgaattacataattttcttaaattattagcggtgtcagtgtcgtgtccagtgtctgtatccgtatccgt---t 31456734  T
Q  120 catagtcatcgatcattaaaccttataattaaatcaaataagatatgatgtgagttattgattta-acaaagtatgatatcaatacaaagacaaagatga 218  Q
     |||||||| ||||| |||| || ||||||||||||| |||||||||||| || ||||||||||  | ||||||||||||||||||||||||||||||||    
T  31456735 tatagtcatagatcaataaatctaataattaaatcaa-taagatatgatgagacttattgatttttagaaagtatgatatcaatacaaagacaaagatga 31456833  T
Q  219 gacctaatcaagttgatatatgttctatgcagtgaaattgctacaaacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgtacctgc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31456834 gacctaatcaagttgatatatgttctatgcagtgaaattgctacaaacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgttcctgc 31456933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 35447883 - 35447940
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||||||||  ||||||||| |||||||||||||| |||||||||| ||||||||||    
T  35447883 gacacgacacaaacacttatagttatactgaattatgtaattttctttaattattagc 35447940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 21091781 - 21091718
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||||||||| |||||| |||||| ||| | ||||||||||||||||||| ||||| ||||    
T  21091781 gacactgacacttgtaattacactgaagtatgttattttcttaaattattagcggtgtcggtgt 21091718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 23406927 - 23406876
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||    
T  23406927 cgacactgacacctatgattattctgaattatgtaattttcttaaattatta 23406876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 42832277 - 42832340
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||| |||||||||||||| |||||| ||| ||||||||| ||||||||||| ||||| ||||    
T  42832277 gacaccgacacttataattacactgaaatatgtaattttctcaaattattagcggtgtcggtgt 42832340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 44860382 - 44860315
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||||| ||||| |||||||| ||||||||||   ||||||| ||||||||||| ||||||||||    
T  44860382 acacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtcagtgt 44860315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 13273015 - 13273069
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||||||||||| ||||||||| | |||||||||||||||||| |||| ||||    
T  13273015 acacgacactgacatttataattagattgaattatataattttctcaaatgatta 13273069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 24975321 - 24975431
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc-----agtgtcagtgttgtgtccggtgtctgtatctgtatcc 113  Q
    |||||||||| ||| | |||| ||| |||||||||||  ||||||| |||||||||||      |||||||||| |||||||||||| ||  |||||||     
T  24975321 gacacgacaccgacgcatatatttacactgaattatacgattttctcaaattattagcggtgtcgtgtcagtgtcgtgtccggtgtccgtgcctgtatct 24975420  T
Q  114 gtgcttcatag 124  Q
    |||||||||||    
T  24975421 gtgcttcatag 24975431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 31808134 - 31808072
Alignment:
Q  25 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||||||| |||||||| |||||||||| | ||||| ||||||||||||| ||||| ||||    
T  31808134 acactgacacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgt 31808072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 12668419 - 12668475
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    |||||||||| |||||||||||||| |||||||||| | ||||| | ||||||||||    
T  12668419 gacacgacaccgacacttataattacactgaattatgtcattttttcaaattattag 12668475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 1328023 - 1327973
Alignment:
Q  37 ataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||||||||||||| ||| ||||||| ||||||||||| ||||| ||||    
T  1328023 ataattatactgaattttatgattttctcaaattattagcggtgtcggtgt 1327973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 2423929 - 2423875
Alignment:
Q  22 acgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||||||||| | |||||||||||| |||||||| ||||||| ||||| |||||    
T  2423929 acgacactgactcatataattatactaaattatatgattttctcaaatttttagc 2423875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18420430 - 18420492
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    ||||| |||| |||||||||||||  | |||||||| | ||||||| ||||||||||||||||    
T  18420430 gacacaacaccgacacttataattgcattgaattatgtgattttctcaaattattagcagtgt 18420492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 34331433 - 34331395
Alignment:
Q  36 tataattatactgaattatataattttcttaaattatta 74  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  34331433 tataattatatttaattatataattttcttaaattatta 34331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 2438719 - 2438780
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  2438719 cgacaccgacacttgtaattacactgaattatgtgattttttgaaattattagctgtgtcag 2438780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 6290219 - 6290163
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||||||| ||| || |||||||||||| || ||||||||||| |||||||||||||    
T  6290219 gacacgacattga-acatataattatactaaaatatataatttttttaaattattagc 6290163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 13204088 - 13204035
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattat 72  Q
    |||||||||||||||| |||| ||||| | |||||| ||||||||| |||||||    
T  13204088 gacacgacactgacacatatagttatattaaattatgtaattttctcaaattat 13204035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 20539672 - 20539733
Alignment:
Q  21 cacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||| ||||||| |||||| ||| |||||||| ||||| | ||||||||||| |||||    
T  20539672 cacgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtc 20539733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 21374705 - 21374758
Alignment:
Q  29 tgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  21374705 tgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 21374758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 21782832 - 21782877
Alignment:
Q  37 ataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||| |||||||||| | ||||||| |||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtc 21782877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 32749821 - 32749866
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttct 64  Q
    |||||||||||||||||||| |||| |||||||||| | |||||||    
T  32749821 gacacgacactgacacttattattacactgaattatgtgattttct 32749866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 34691805 - 34691858
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    |||||| ||||| |||||||| |||||||||||| ||||| | |||||||||||    
T  34691805 cgacaccgacacatataattacactgaattatatgattttatcaaattattagc 34691858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 34714217 - 34714270
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    |||||| ||||| |||||||| |||||||||||| ||||| | |||||||||||    
T  34714217 cgacaccgacacatataattacactgaattatatgattttatcaaattattagc 34714270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 39323317 - 39323264
Alignment:
Q  29 tgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  39323317 tgacacttgtaattacactgaattatgtaattttgtcaaattattagcggtgtc 39323264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 15909629 - 15909673
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttct 64  Q
    ||||||||||| ||| |||||||| |||||||||| |||||||||    
T  15909629 acacgacactgtcacatataattacactgaattatgtaattttct 15909673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 18589255 - 18589198
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||||| |||| ||| |||||||| | |||||||||  ||||||||||||||||    
T  18589255 cgacactgacacatatagttagactgaattgtgtaattttct--aattattagcagtgtc 18589198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 18622669 - 18622613
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    ||||||||||  |||| |||||||| |||||||||| | ||||| ||||||||||||    
T  18622669 gacacgacaccaacacgtataattacactgaattatgtgattttattaaattattag 18622613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 19614246 - 19614178
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||| |||||||| |||||||| ||||||||  |  |||||   ||||||||||||||||||||||    
T  19614246 gacacgatactgacacatataattacactgaatttaaagatttttccaaattattagcagtgtcagtgt 19614178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 38442366 - 38442314
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    |||||| |||||||||||||||| |||||||| | ||||| |||||| |||||    
T  38442366 cgacaccgacacttataattatattgaattatgtgatttttttaaatcattag 38442314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 21465475 - 21465370
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgct 118  Q
    ||||||||||  |||||| |||||| |  ||||||||| ||||| | ||||||||||| ||||| |||| |||||||||||| |||||||||||||| ||    
T  21465475 gacacgacaccaacacttgtaattacatcgaattatatgattttttcaaattattagctgtgtccgtgtcgtgtccggtgtccgtatctgtatccgtcct 21465376  T
Q  119 tcatag 124  Q
    ||||||    
T  21465375 tcatag 21465370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 40332248 - 40332167
Alignment:
Q  25 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatc 106  Q
    |||| ||||||| |||||| |||||||||| | ||||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  40332248 acaccgacacttgtaattacactgaattatgtgattttctcaaattatttgcagtgtccgtgtcgtgtccggtgtccgtatc 40332167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 14731763 - 14731679
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgt 115  Q
    |||| |||||||| ||| |||||| | ||||||| ||||||||||||||||| ||||  ||||| ||||| ||||||||||||||    
T  14731763 acacatataattacactaaattatgtgattttctcaaattattagcagtgtctgtgtcatgtccagtgtccgtatctgtatccgt 14731679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 11803310 - 11803254
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||| |||||||| |||||||||| | ||||||||||||||||| ||||||||||||    
T  11803310 acacatataattacactgaattatgtgattttcttaaattattaacagtgtcagtgt 11803254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 14634137 - 14634200
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||||  |||  |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  14634137 gacacgacaccaacaaatataattacactgaattatataattttcttaaattgttagcggtgtc 14634200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 25566903 - 25566836
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  25566903 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagtgt 25566836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 3025610 - 3025556
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagca 77  Q
    |||||||||||| |||||||| |||||||||| | ||||||| ||||||||||||    
T  3025610 cgacactgacacctataattacactgaattatgtgattttctcaaattattagca 3025556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 4786338 - 4786445
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattatta--------gcagtgtcagtgttgtgtccggtgtctgtatctgtatccg 114  Q
    |||||| ||||| |||||||| |||||||||| | |||||||||||||||||        |  |||||||||| |||| ||||||| || ||||||||||    
T  4786338 cgacaccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtcgtgttcggtgtcagtgtctgtatccg 4786437  T
Q  115 tgcttcat 122  Q
    ||||||||    
T  4786438 tgcttcat 4786445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 12606830 - 12606888
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| ||||| |||||||| | |||||||||| ||||||| |||||||||||||||||    
T  12606830 gacaccgacacatataattacattgaattatatgattttctcaaattattagcagtgtc 12606888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 13844596 - 13844655
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||||| |||||||| ||| |||||| | ||||||| |||||||||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtc 13844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 22652039 - 22651976
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| ||||||| |||||||| |||||||| | ||||| | ||||||||||| |||||    
T  22652039 gacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtc 22651976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 24362198 - 24362261
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||| |||||| |||||||| |||||||||| | ||| ||| ||||||||||| |||||    
T  24362198 gacacgacattgacacatataattacactgaattatgtgattctctcaaattattagcggtgtc 24362261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 29776082 - 29776036
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||||||||||||  | ||||||| |||||||||||||||||    
T  29776082 tataattatactgaattacgtgattttctcaaattattagcagtgtc 29776036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 43737882 - 43737928
Alignment:
Q  78 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    ||||| |||| |||||||||||| || ||||||||||||||||||||    
T  43737882 gtgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 43737928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 12570515 - 12570568
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtca 83  Q
    ||||| |||||||| ||| |||||| |  |||||||||||||||||||||||||    
T  12570515 gacacatataattacacttaattatgtgtttttcttaaattattagcagtgtca 12570568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 25172694 - 25172759
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||||||| ||||| |||||||| | | || ||| ||||||| | |||||||||||||||||||    
T  25172694 gacacgacaccgacacatataattacattaaaatatgtaattttatcaaattattagcagtgtcag 25172759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 16642033 - 16642081
Alignment:
Q  76 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    ||||||| |||| |||||||| ||| ||||| |||||||||||||||||    
T  16642033 cagtgtctgtgtcgtgtccggcgtccgtatccgtatccgtgcttcatag 16642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 25192354 - 25192406
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||||||||||||||||||| | | ||| | ||||||||||| |||||    
T  25192354 gacacttataattatactgaattatgtcactttttcaaattattagctgtgtc 25192406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 27213599 - 27213547
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| |||||||| | |||||||| | ||||||| |||||||||||||||||    
T  27213599 gacacatataattacagtgaattatgtgattttctgaaattattagcagtgtc 27213547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 31236584 - 31236636
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| |||||||| | |||||||| | ||||||| |||||||||||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattattagcagtgtc 31236636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 34897137 - 34897085
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| |||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  34897137 gacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 34897085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 8160467 - 8160374
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||| |||||||||| |||| ||||||| || || |||||||||| ||||||    
T  8160467 acacatataattacactaaattatgtaattttcttaaattattagcggtgtcagtgtcgtgttcggtgtccgtgtcagtatccgtgcatcatag 8160374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 18013069 - 18013135
Alignment:
Q  18 agacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||| ||||||||    
T  18013069 agacacgacactgacacatataattacactgaattatgtaatttttttaaattattagtagtgtcag 18013135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 7758385 - 7758320
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||||||| |||||  |||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7758385 gacacgacaccgacacacataattatactgaattatataattttctaaaattattagtggtgtcag 7758320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 9778563 - 9778452
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattag------cagtgtcagtgttgtgtccggtgtctgtatctgtatc 112  Q
    |||||||||| ||||||| ||||||||||||||||| | ||||| | ||||||| ||      ||||||| |||| |||||||||||| || || |||||    
T  9778563 gacacgacaccgacacttgtaattatactgaattatgtgattttttcaaattatcagctgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatc 9778464  T
Q  113 cgtgcttcatag 124  Q
    ||||||||||||    
T  9778463 cgtgcttcatag 9778452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 25239709 - 25239805
Alignment:
Q  29 tgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatagt 125  Q
    |||||| |||||||| ||||| ||||| |||||||| ||||||||| | |||||  |||||||||  || |||| |||||| |||||||||||||||    
T  25239709 tgacacctataattacactgagttataaaattttctcaaattattatccgtgtcgatgttgtgtctagtttctggatctgtgtccgtgcttcatagt 25239805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 5236052 - 5235986
Alignment:
Q  16 tcagacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||||||| || |  |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  5236052 tcagacacgacaccgatatatataattacactaaattatataattttcttaaattattagcggtgtc 5235986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 24146874 - 24146798
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 100  Q
    ||||| ||||| |||||||||| |||||||| | ||||||| |||||||||||| |||| ||||  |||||||||||    
T  24146874 gacaccgacacatataattatattgaattatgtgattttctaaaattattagcattgtcggtgtgatgtccggtgtc 24146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 5548739 - 5548676
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||||||||| |||||||| |||||||||| | ||||||| ||||||| ||| |||||    
T  5548739 gacacgacactgacacatataattacactgaattatttgattttctcaaattatcagcggtgtc 5548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 13770754 - 13770691
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||  ||||||| |||||| |||||||||| ||||||| ||||||||||||| |||||    
T  13770754 gacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtc 13770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 32308183 - 32308120
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||||||||| || ||||| |||||||||| | ||||||| ||||||||||| |||||    
T  32308183 gacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtc 32308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 22484083 - 22484025
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| ||||| |||||||||||||||||||  |||||||| ||||||||||| |||||    
T  22484083 gacaccgacacatataattatactgaattatgcaattttctaaaattattagcggtgtc 22484025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 21140977 - 21141034
Alignment:
Q  18 agacacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    ||||||||| | ||||| |||||| | |||||||||||| ||||||||||||||||||    
T  21140977 agacacgactccgacacctataatcacactgaattatatgattttcttaaattattag 21141034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 21880211 - 21880158
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    |||||| ||||||| |||||| |||||||||| ||||||||| |||||||||||    
T  21880211 cgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagc 21880158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 7328687 - 7328747
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagt 79  Q
    |||||||||| ||||| |||||||| ||| |||||| | ||||||| ||||||||||||||    
T  7328687 gacacgacaccgacacatataattacactaaattatgttattttctcaaattattagcagt 7328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 19992061 - 19992001
Alignment:
Q  22 acgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||| |||||||||||||| |||||| ||| | ||||||| ||||||||||| |||||    
T  19992061 acgacaccgacacttataattacactgaaatatgtgattttctcaaattattagctgtgtc 19992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 27732246 - 27732290
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattatta 74  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||    
T  27732246 gacacatataattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 11890915 - 11891022
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt-tgtgtccggtgtctgtatctgtatccgtgc 117  Q
    ||||||||||  ||||| ||||||| |||||||||||| ||||| | ||||||||| | || |||||||  ||||| ||||||  | || |||||||| |    
T  11890915 gacacgacacctacactcataattacactgaattatatgattttttcaaattattaaccgtatcagtgtccgtgtctggtgtccatgtccgtatccgtac 11891014  T
Q  118 ttcatagt 125  Q
    ||||||||    
T  11891015 ttcatagt 11891022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 12278887 - 12278836
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||| ||||||    
T  12278887 gacacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 24339705 - 24339642
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  24339705 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 24339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 28155629 - 28155570
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||||||| |||||| || ||||||| ||||||||| ||||||||||| |||||    
T  28155629 cgacaccgacacttgtaattacaccgaattatgtaattttctcaaattattagcggtgtc 28155570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 3721152 - 3721098
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagca 77  Q
    |||||| ||||| |||||||||||| |||||| | ||||||| ||||||||||||    
T  3721152 cgacaccgacacatataattatactaaattatgtgattttctcaaattattagca 3721098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 10377553 - 10377507
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||| |||||||||||| ||||||||| ||||||| |||||||    
T  10377553 tataattacactgaattatatgattttcttatattattaacagtgtc 10377507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 19206108 - 19206050
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| ||||| |||||||||| |||||||| | ||||||| ||||||||||| |||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtc 19206050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 26033457 - 26033556
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgct 118  Q
    ||||||| || ||||||| |||||| |||||||||| | ||||| | ||||||||||| | ||||||||      | ||||||||||| ||||||||| |    
T  26033457 gacacgagaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgcgtcagtgt------ccgtgtctgtatccgtatccgtgat 26033550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 1885560 - 1885519
Alignment:
Q  81 tcagtgttgtgtccggtgtctgtatctgtatccgtgcttcat 122  Q
    ||||||| |||||||||||| || ||||||||||||||||||    
T  1885560 tcagtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat 1885519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 3991384 - 3991331
Alignment:
Q  22 acgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    ||||||| ||||||| ||||||||||||||||| | ||||| | ||||||||||    
T  3991384 acgacaccgacacttgtaattatactgaattatgtgattttttcaaattattag 3991331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 5409919 - 5409952
Alignment:
Q  92 tccggtgtctgtatctgtatccgtgcttcatagt 125  Q
    |||||||||||| |||||||||||||||||||||    
T  5409919 tccggtgtctgtgtctgtatccgtgcttcatagt 5409952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 23849460 - 23849509
Alignment:
Q  25 acactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||| ||||| ||||||||||||||||||| |  ||||||||||||||||    
T  23849460 acaccgacacatataattatactgaattatgtgtttttcttaaattatta 23849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 8239057 - 8239101
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattatta 74  Q
    ||||| |||||||| |||||||||||  |||||||||||||||||    
T  8239057 gacacatataattacactgaattataagattttcttaaattatta 8239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 17851410 - 17851374
Alignment:
Q  89 gtgtccggtgtctgtatctgtatccgtgcttcatagt 125  Q
    |||||||||||| || |||||||||||||||||||||    
T  17851410 gtgtccggtgtccgtgtctgtatccgtgcttcatagt 17851374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 19213862 - 19213798
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| ||||||| || ||| |||| ||||| | ||||| | ||||||||||||||||||||||    
T  19213862 cgacaccgacacttgtatttacactgcattatgtgattttttaaaattattagcagtgtcagtgt 19213798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 20549850 - 20549786
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| ||||| |||||||| |||||||||  | ||||||| ||||||||||| ||||| ||||    
T  20549850 cgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgt 20549786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 30813856 - 30813812
Alignment:
Q  38 taattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| |||||||||| ||||||||| |||||||||||| ||||    
T  30813856 taattacactgaattatgtaattttctcaaattattagcaatgtc 30813812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 263368 - 263430
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    ||||||||||||||||||||||||| |||||||||| |  |||||| ||||||||||||||||    
T  263368 gacacgacactgacacttataattacactgaattatgtggttttctcaaattattagcagtgt 263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 8039831 - 8039893
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||    
T  8039831 gacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 8383316 - 8383257
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| |||||||||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  8383316 cgacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtc 8383257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 11313796 - 11313864
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||||||| |||| |||||||| ||| |||||| | ||||||| ||||||||||||||||| ||||    
T  11313796 gacacgacactaacacatataattacactaaattatgtgattttctcaaattattagcagtgtcggtgt 11313864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 14747557 - 14747509
Alignment:
Q  78 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatagtc 126  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  14747557 gtgtcagtgtcgtgtccggtgtccgtatccgtatccgtgcttcatagtc 14747509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 16789075 - 16789020
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||| |||||||||||    
T  16789075 gacacgacaccaacacttataattacactgaattatatgatttttttaaattatta 16789020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 30994878 - 30994940
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    ||||| ||||||| || |||||||| |||||||| | | ||||||||||||||||||||||||    
T  30994878 gacacaacactgatacgtataattacactgaattgtgtgattttcttaaattattagcagtgt 30994940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 7614415 - 7614479
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| ||||  ||||||||||||||||||| | ||||||||||||||||| | ||||| ||||    
T  7614415 cgacaccgacatatataattatactgaattatgtgattttcttaaattattaactgtgtcggtgt 7614479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 14209176 - 14209120
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    |||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||    
T  14209176 gacacgacactgacacttgtaattacactgaattatgtgattttttaaaattattag 14209120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 17005616 - 17005671
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    |||| |||| |||||||||||||| |||||||||||| ||||| | ||||||||||    
T  17005616 acacaacaccgacacttataattacactgaattatatgattttatcaaattattag 17005671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 25093493 - 25093446
Alignment:
Q  77 agtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    ||||||||||| ||||||||||||||| | ||||||||| ||||||||    
T  25093493 agtgtcagtgtcgtgtccggtgtctgtgtttgtatccgtacttcatag 25093446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 11252023 - 11251973
Alignment:
Q  37 ataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||| |||||||||| | ||||||| |||||||||||| |||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattattagcaatgtcagtgt 11251973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 15864885 - 15864788
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtcag--tgttgtgtccggtgtctgtatctgtatccgtgcttcatagt 125  Q
    ||||| ||| |||| ||| |||||||| ||||| | ||||||||| | ||||| |  ||| |||||||||||| || ||||| |||||||||||||||    
T  15864885 gacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatagt 15864788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 21256984 - 21257046
Alignment:
Q  21 cacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtca 83  Q
    ||||| || ||||||| ||||||||||||||||| | ||||| | ||||||||||| ||||||    
T  21256984 cacgataccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtca 21257046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 28678365 - 28678307
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcag 78  Q
    ||||||||| ||||| || ||||||||| |||||| | ||||| |||||||||||||||    
T  28678365 acacgacaccgacacatacaattatactaaattatgtgattttattaaattattagcag 28678307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 34307787 - 34307841
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||||||||||| |||||| ||| | ||||||| ||||||||||| |||||||    
T  34307787 gacacttataattacactgaaatatgtgattttctcaaattattagcggtgtcag 34307841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 45451612 - 45451554
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    |||||| ||||| ||| ||||||||||| ||| | ||||||| ||||||||||||||||    
T  45451612 cgacaccgacacatattattatactgaagtatgtgattttctcaaattattagcagtgt 45451554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 1509599 - 1509534
Alignment:
Q  22 acgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||| ||||||| |||||| ||| |||||| | ||||| | ||||||||||| ||||||||||    
T  1509599 acgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcagtgt 1509534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 3164095 - 3164140
Alignment:
Q  79 tgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||| |||| |||||||||||| || ||||||||||||||||||||    
T  3164095 tgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 3164140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 17568691 - 17568784
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt-tgtgtccggtgtctgtatctgtatccgtgcttcata 123  Q
    |||||| |||||| | | |||||| ||||||||| |||||||||   |||||| ||  ||||||||||||| || || ||||||||||||||||    
T  17568691 acacttgtaattacattaaattatgtaattttctcaaattattaatggtgtcattggctgtgtccggtgtccgtgtccgtatccgtgcttcata 17568784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 25948883 - 25948940
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||||||||  ||||||||||||| |||||||||| | ||||| | |||||||||||    
T  25948883 gacacgacaccaacacttataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 49505154 - 49505207
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    |||||||||||| |||||||| ||| |||||| | ||||||| |||||||||||    
T  49505154 cgacactgacacatataattacactaaattatgtgattttctcaaattattagc 49505207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 7171486 - 7171446
Alignment:
Q  84 gtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||| ||||||||||||||| || |||||||||||||||||    
T  7171486 gtgtcgtgtccggtgtctgtgtccgtatccgtgcttcatag 7171446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 7928509 - 7928445
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| ||||| |||||||| |||||||||| | ||||| | ||||||||||| ||||| ||||    
T  7928509 cgacaccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcggtgt 7928445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 9624687 - 9624635
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattagcagtgtcagtgtt 88  Q
    |||||||| | |||||||| | ||||||| |||||||||||||||||| ||||    
T  9624687 tataattacattgaattatgtgattttctcaaattattagcagtgtcactgtt 9624635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 15505798 - 15505842
Alignment:
Q  31 acacttataattatactgaattatataa-ttttcttaaattatta 74  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||    
T  15505798 acacttataattacactgaattatataattttttttaaattatta 15505842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 24205108 - 24205156
Alignment:
Q  76 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    ||||||| |||| |||||||||||| || ||||| ||||||||||||||    
T  24205108 cagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 25892512 - 25892468
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattatta 74  Q
    ||||| ||| |||| |||||||||||| |||||||||||||||||    
T  25892512 gacacctatgattacactgaattatatcattttcttaaattatta 25892468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 51206353 - 51206417
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| ||||||| || ||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  51206353 cgacaccgacacttgtatttacactgaattatgtgattttttcaaattattagctgtgtcagtgt 51206417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 8730 - 8666
Alignment:
Q  18 agacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||||| ||||||||||||||||||||| ||| | |||||| ||||||||||| ||||||    
T  8730 agacacgacaccgacacttataattatactgaactatgtgattttcctaaattattagaagtgtc 8666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 3490397 - 3490498
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtc--------agtgttgtgtccggtgtctgtatctgtatccgtgcttca 121  Q
    ||||||| |||||| ||||||| || || |||||| |||||||||||||||||        ||||| |||||||||||||||||| ||||||||||||||    
T  3490397 gacacttgtaattacactgaataatgtagttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgtatccgtatccgtgcttca 3490496  T
Q  122 ta 123  Q
    ||    
T  3490497 ta 3490498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 5376496 - 5376559
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| ||||||| |||||| |||||||||| | ||||||||||||||||||| |||||    
T  5376496 gacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtc 5376559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 8010294 - 8010340
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||    
T  8010294 gacacttataattatactgaattatataattttttcaaattattagc 8010340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 1486705 - 1486770
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||||||| |||||||||||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  1486705 gacacgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcag 1486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 21038146 - 21038089
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    |||||||||||||| | ||| |||| |||||||||| |||||||||||||||||||||    
T  21038146 gacacgacactgacgcatatgattacactgaattatgtaattttcttaaattattagc 21038089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 34712379 - 34712440
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtg 80  Q
    |||||||||||||||| |||||||| ||| |||||| | ||||||| |||||||||||||||    
T  34712379 gacacgacactgacacatataattacactaaattatgttattttctcaaattattagcagtg 34712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7918207 - 7918263
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    |||||||||||||||| |||||||| |||||||||| | ||||||| ||||||||||    
T  7918207 gacacgacactgacacatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 9629896 - 9629959
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| |||||||||||| | |||||||||||| ||||| | ||||||||||| |||||    
T  9629896 gacacgacaccgacacttataatcacactgaattatatgattttatcaaattattagcggtgtc 9629959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 29229485 - 29229434
Alignment:
Q  58 attttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgt 109  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| ||||||||    
T  29229485 attttctcaaattattagcagtgtcagtgtcgtgtccagtgtccgtatctgt 29229434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 17831594 - 17831640
Alignment:
Q  78 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||    
T  17831594 gtgtcagtgtcgtatccggtgtctgtgtctgtatccgtgcttcatag 17831640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 22907341 - 22907390
Alignment:
Q  25 acactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||| |||||||||||||||||  |||||||||||||||| |||||||||    
T  22907341 acaccgacacttataattataccaaattatataattttctcaaattatta 22907390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 25361949 - 25361896
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattat 72  Q
    |||||||||||||||| |||||||| |||||||||| | ||||||| |||||||    
T  25361949 gacacgacactgacacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 39130767 - 39130828
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||| ||||| |||||||| ||| |||||||||||||||| |||||||||  ||||||||    
T  39130767 cgacaccgacacatataattacactaaattatataattttctaaaattattaatagtgtcag 39130828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 17754374 - 17754306
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||| |||||||||| |||| ||| |||||||||| ||||||| | ||||||||||| ||||| ||||    
T  17754374 gacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 17754306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 35999330 - 35999374
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattag 75  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||    
T  35999330 acacatataattatactaaattatatgattttcttaaattattag 35999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 38503383 - 38503315
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||| ||||| ||||| |||||||| |||||| ||||| ||||||| ||||||||||| ||||| ||||    
T  38503383 gacaggacaccgacacatataattacactgaaatatatgattttctcaaattattagcggtgtcggtgt 38503315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 40181930 - 40181866
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| || || |||||||| |||||||||| | ||||||| ||||||||||||||||| ||||    
T  40181930 cgacaccgatacatataattacactgaattatgtgattttctcaaattattagcagtgtctgtgt 40181866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 13436509 - 13436458
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||| |||||||| |||||||||| | |||| ||||||||||||||||||||    
T  13436509 acacatataattacactgaattatgtgatttccttaaattattagcagtgtc 13436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 21530748 - 21530697
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||| |||||||||||||||||  |||||||| ||||||| |||||||||    
T  21530748 cgacaccgacacttataattataccaaattatatgattttctcaaattatta 21530697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 37055853 - 37055912
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagt 79  Q
    |||||| ||||| |||| |||||| ||| |||||| ||||||||| ||||||||||||||    
T  37055853 acacgatactgatacttgtaattacactaaattatgtaattttctcaaattattagcagt 37055912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 41877470 - 41877529
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||||||| |||||| ||| |||||| ||||||||| ||||||||||| |||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtc 41877529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 47989560 - 47989505
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||||||| ||||||| |||||| |||||||||| | ||||| |||||||||||    
T  47989560 gacacgacaccgacacttgtaattacactgaattatgtgatttttttaaattatta 47989505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 52903308 - 52903257
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||| ||||| |||||||| |||||||||||| ||||| |||||||||||    
T  52903308 cgacaccgacacatataattacactgaattatatgattttattaaattatta 52903257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 5927340 - 5927398
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    |||||||||||||| |||||| | | |||||||| ||||| | ||||||||||||||||    
T  5927340 cgacactgacacttgtaattacattaaattatatgattttttcaaattattagcagtgt 5927398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 22881679 - 22881725
Alignment:
Q  78 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||||||||| |||||||||||| || ||| ||||||||||||||||    
T  22881679 gtgtcagtgtcgtgtccggtgtccgtgtctatatccgtgcttcatag 22881725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 28674846 - 28674808
Alignment:
Q  36 tataattatactgaattatataattttcttaaattatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  28674846 tataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 36878519 - 36878461
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| ||||| |||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtc 36878461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 52284755 - 52284697
Alignment:
Q  30 gacacttataattatactgaattata-taattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||| |||||||||||||||||| |  |||| ||||||||||||| ||||||||||    
T  52284755 gacacttgtaattatactgaattatatttttttttttaaattattagctgtgtcagtgt 52284697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 5944346 - 5944287
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttctt--aaattattagc 76  Q
    |||||||||| |||||||||||||| |||||||||| | ||||| ||  |||||||||||    
T  5944346 gacacgacaccgacacttataattacactgaattatgtgattttttttcaaattattagc 5944287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 31694706 - 31694765
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttctt--aaattattagc 76  Q
    |||||||||| ||||||| ||||||||||||||||| | ||||| ||  |||||||||||    
T  31694706 gacacgacaccgacacttgtaattatactgaattatgtgattttttttcaaattattagc 31694765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 48148034 - 48148098
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttctt-aaattattagcagtgtca 83  Q
    ||||||||| ||||  |||||||| |||||||||||| ||||| || ||||||||||| ||||||    
T  48148034 acacgacaccgacatatataattacactgaattatatgatttttttaaaattattagcggtgtca 48148098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 7723246 - 7723309
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| || || ||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  7723246 gacacgacaccgatacatataattatgctgaattatatgattttctcaaattattagcagtgtc 7723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 9025490 - 9025553
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| ||||| |||||||| |||||||||| | ||||||| |||||||||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 12696387 - 12696324
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  12696387 gacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 12696324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 32511674 - 32511727
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||| |||||||    
T  32511674 acacttataattacactgaattatgtgattttcttaaattattagcggtgtcag 32511727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 7996378 - 7996437
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||| | |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  7996378 cgacaccgacgcatataattacactgaattatatgattttctcaaattattagcagtgtc 7996437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 8022423 - 8022364
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||| | |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  8022423 cgacaccgacgcatataattacactgaattatatgattttctcaaattattagcagtgtc 8022364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 8389485 - 8389530
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||    
T  8389485 tataattacactgaattatatgattttcttaaattattagtagtgt 8389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 17411876 - 17411917
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattat 72  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  17411876 acacatataattatactgaattatatgattttcttaaattat 17411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 28715354 - 28715290
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  28715354 cgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagccgtgtcagtgt 28715290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 33817995 - 33817900
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattagcagtgtcagtgtt------gtgtccggtgtctgtatctgtatccgtgcttcatagt 125  Q
    |||||||| ||||||||||  ||||||||  |||||||||| |||||||||||      ||||||||||||  |  ||||||||||||||||||||    
T  33817995 tataattacactgaattatgaaattttctccaattattagcggtgtcagtgttcgtgccgtgtccggtgtccatgactgtatccgtgcttcatagt 33817900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 34197173 - 34197125
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaa 68  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||||    
T  34197173 acacgacaccgacacttataattacactgaattatatcactttcttaaa 34197125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 7973716 - 7973665
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaatta 71  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||| ||||||||    
T  7973716 acacgacaccgacacttataattacacttaattatgtaatttttttaaatta 7973665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 7977830 - 7977889
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 7977889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 8931598 - 8931661
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||  ||||| ||||||||||||||||||| | ||||||| ||||| ||||| |||||    
T  8931598 gacacgacatcgacacatataattatactgaattatgttattttctcaaatttttagctgtgtc 8931661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 14721292 - 14721249
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattatta 74  Q
    |||| |||||||||| |||||||| |||||||||||||||||||    
T  14721292 acacatataattatagtgaattatgtaattttcttaaattatta 14721249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 16766760 - 16766697
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  16766760 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 16766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 19040411 - 19040352
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||||| |||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  19040411 cgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 19040352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 21924935 - 21924994
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||||| |||||||| |||||||||| | || |||| |||||||||||||||||    
T  21924935 cgacaccgacacatataattacactgaattatttgatattctcaaattattagcagtgtc 21924994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 26562752 - 26562689
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||  ||||| |||||||| |||||||||| | ||||||| ||||| |||||||||||    
T  26562752 gacacgacatcgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtc 26562689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 31384982 - 31384927
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    ||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||    
T  31384982 acacgacactgacacttgtaattacactgaattatgtgattttttcaaattattag 31384927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 34895030 - 34895085
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||| ||||||||||| ||| |||| |||||||| ||||||||||| |||||||||    
T  34895030 gacatgacactgacacctatgattacactgaattgtataattttctcaaattatta 34895085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 3398680 - 3398619
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||| || ||||||||||| |||||||||||| ||||| | ||||||||||| |||||    
T  3398680 acacgacaccgatacttataattacactgaattatatgatttt-tcaaattattagctgtgtc 3398619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 7265593 - 7265651
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    |||||| ||||| |||||||| |||||||||| | ||||||| ||||||||||| ||||    
T  7265593 cgacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgt 7265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 7938174 - 7938116
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| |||||||||||||| ||| |||||||| ||||| | ||||||||||| |||||    
T  7938174 gacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtc 7938116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 9658925 - 9658879
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||| |||||||||| | ||||||||||||||||||| |||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtc 9658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 7086858 - 7086797
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtg 80  Q
    ||||| |||| ||||| |||||||| ||| |||||| | ||||||| |||||||||||||||    
T  7086858 gacactacaccgacacatataattacactaaattatgtgattttctcaaattattagcagtg 7086797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 7377975 - 7377930
Alignment:
Q  78 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcata 123  Q
    ||||| |||||||||||||||||||  || ||||||||||||||||    
T  7377975 gtgtctgtgttgtgtccggtgtctgggtccgtatccgtgcttcata 7377930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 13364707 - 13364764
Alignment:
Q  25 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||| ||||| ||| |||| |||||||||||| ||||||| ||||||| |||||||||    
T  13364707 acaccgacacatatgattacactgaattatatgattttctcaaattataagcagtgtc 13364764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 20576629 - 20576686
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||||||||  ||||||||||||| ||||||||||  ||||||||  ||||||||||    
T  20576629 gacacgacaccaacacttataattacactgaattatgcaattttctcgaattattagc 20576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 1681742 - 1681702
Alignment:
Q  84 gtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||| |||| |||||||||| ||||||||||||||||||||    
T  1681742 gtgtcgtgttcggtgtctgtgtctgtatccgtgcttcatag 1681702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 9522954 - 9522898
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    ||||| |||| ||||||| |||||| |||||||||| | ||||| ||||||||||||    
T  9522954 gacacaacaccgacacttgtaattacactgaattatgtgatttttttaaattattag 9522898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 32299259 - 32299219
Alignment:
Q  84 gtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    ||||| |||| ||||||||| ||||||||||||||||||||    
T  32299259 gtgttatgtctggtgtctgtgtctgtatccgtgcttcatag 32299219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 6471886 - 6471996
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt---tg---tgtccggtgtctgtatctgtatcc 113  Q
    |||||||||  |||| |||||||| |||||||||| | ||||||| ||||||||||| ||||||||||   ||   |||||||| ||||| |||||| ||    
T  6471886 acacgacacccacacatataattacactgaattatgtgattttctcaaattattagccgtgtcagtgtccgtgtcatgtccggtttctgtgtctgtaacc 6471985  T
Q  114 gtgcttcatag 124  Q
    |||||||||||    
T  6471986 gtgcttcatag 6471996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 32630735 - 32630796
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||||||||| |||||||| | |||||||||||||||||| ||||||||| | |||||||    
T  32630735 cgacactgacacatataattacattgaattatataattttctcaaattattatcggtgtcag 32630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 39698604 - 39698539
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 84  Q
    |||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  39698604 gacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcag 39698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25817550 - 25817494
Alignment:
Q  27 actgacacttataattatactgaattatataattttcttaaattattagcagtgtca 83  Q
    |||||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  25817550 actgacacatataatcatactgaatcatatgatttttttaaattattagcagtgtca 25817494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    ||||||||| ||||| |||||||| ||| |||||| ||||||||| ||||||||||| ||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 25863256 - 25863212
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||    
T  25863256 gacacttataattacactgaattatatcattttctcaaattatta 25863212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 41091253 - 41091321
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||||||  ||||| |||||||| |||||||||| | ||||||| |||| |||||||||||| ||||    
T  41091253 gacacgacatcgacacatataattacactgaattatgtgattttctcaaatcattagcagtgtccgtgt 41091321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 3966566 - 3966503
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| ||||| |||||||| |||||||| | | ||||||| ||||||||||| |||||    
T  3966566 gacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtc 3966503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 15410456 - 15410507
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||| ||| |||| ||||||| |||||||||||||||||||||||| |||||    
T  15410456 acacatatgattacactgaatcatataattttcttaaattattagcggtgtc 15410507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 18592136 - 18592073
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| | ||| |||||||| | |||||||| ||||||||||||| ||||||| |||||    
T  18592136 gacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtc 18592073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 39205943 - 39205880
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||||||||  |||| |||||||| ||  |||||||| ||||||| |||||||||||||||||    
T  39205943 gacacgacaccaacacatataattacacctaattatatgattttctcaaattattagcagtgtc 39205880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 43001851 - 43001800
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| |||||| |||||||||| ||||||| | |||||||||||||||||    
T  43001851 acacttgtaattacactgaattatgtaattttttcaaattattagcagtgtc 43001800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 2236811 - 2236848
Alignment:
Q  49 aattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2236811 aattatataattttcttaaattattagc-gtgtcagtgt 2236848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 15382538 - 15382477
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttctt--aaattattagcagtgtc 82  Q
    |||||| ||||||| ||||||||||||||||||| ||||| ||  ||||||||||| |||||    
T  15382538 cgacaccgacacttgtaattatactgaattatatgattttttttcaaattattagctgtgtc 15382477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 23287350 - 23287400
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    ||||||||||| |||||||||| |||||||| | |||||| ||||||||||    
T  23287350 gacactgacacatataattatattgaattatgtcattttcctaaattatta 23287400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 6770600 - 6770538
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||||||||  |||| || |||||||||| | ||||||||||||||||||  ||||||||||    
T  6770600 cgacactgacac--ataagtacactgaattatgtgattttcttaaattattagttgtgtcagtgt 6770538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25888289 - 25888353
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttctt--aaattattagcagtgt 81  Q
    |||||||||| || ||||||||||| |||||||||||| ||||| ||  |||||||||| |||||    
T  25888289 gacacgacacggagacttataattacactgaattatatgattttttttaaaattattagtagtgt 25888353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 7997173 - 7997217
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||||||||||| |||| ||||||| ||||||| |||||||||    
T  7997173 gacacttataattacactgtattatatcattttctcaaattatta 7997217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 12927712 - 12927660
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||||||||  |||||||| ||| |||||||| ||||||| |||||||||||    
T  12927712 gacactgacatatataattacactaaattatatgattttctcaaattattagc 12927660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 21542093 - 21542037
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 75  Q
    |||||||||| ||||||| |||||| |||||||||| | || || ||||||||||||    
T  21542093 gacacgacaccgacacttgtaattacactgaattatgttatctttttaaattattag 21542037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 27932279 - 27932235
Alignment:
Q  38 taattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggtgtc 27932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 56985 - 56932
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattat 72  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||| |||||||    
T  56985 gacacgacactgacacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 63831 - 63774
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 81  Q
    ||||| ||||||| |||||  |||||||||| ||||||||| ||||||||||| ||||    
T  63831 gacaccgacacttgtaattgcactgaattatgtaattttctcaaattattagcggtgt 63774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 37203315 - 37203222
Alignment:
Q  31 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||||| |||||| ||| |||||| | ||||| | ||||||||||| ||||| |||| |||||||||||| || ||  ||||||||||||||||    
T  37203315 acacttgtaattacactaaattatgtcattttttcaaattattagccgtgtctgtgtcgtgtccggtgtccgtgtccatatccgtgcttcatag 37203222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 30838273 - 30838213
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagt 79  Q
    |||||||||| || ||||||||||| ||| |||||||||||||| | ||||||||||||||    
T  30838273 gacacgacaccgatacttataattacactaaattatataattttatcaaattattagcagt 30838213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 54580023 - 54580107
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt-tgtgtccggtgtctgtatc 106  Q
    |||||| |||||||||||||| |||||||||| | ||||| | ||||||||||  ||||||| ||  ||||||||||||||||||    
T  54580023 cgacaccgacacttataattacactgaattatgtgattttttcaaattattagttgtgtcagcgtccgtgtccggtgtctgtatc 54580107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 56257994 - 56257933
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| |||||  ||||||| |||||||||||| ||||||| |||||||||||||||||    
T  56257994 gacacgacacagacac--ataattacactgaattatatgattttctcaaattattagcagtgtc 56257933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 3144659 - 3144753
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    ||||| ||| |||| ||| |||||||| ||||||| ||||||||| | ||||  |||| ||| |||||||| || ||||| ||||||||||||||    
T  3144659 gacacctatgattacactaaattatatcattttctgaaattattatccgtgtaggtgtcgtgcccggtgtccgtgtctgtgtccgtgcttcatag 3144753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 1213228 - 1213280
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtca 83  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  1213228 gacacatataattacactgaattatataatttt-ttaaattattaacagtgtca 1213280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 35952613 - 35952674
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtg 80  Q
    ||||||||||||| || |||||||| | |||||||||| ||||| | |||||||||||||||    
T  35952613 gacacgacactgatacatataattacattgaattatatgattttatcaaattattagcagtg 35952674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 848009 - 847957
Alignment:
Q  24 gacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    ||||| ||||||| |||||||| |||||||| ||||||||| |||||||||||    
T  848009 gacaccgacacttgtaattatagtgaattatgtaattttctcaaattattagc 847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 19312398 - 19312289
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataa----ttttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccg 114  Q
    |||||||||| || ||||||||||| ||||||| || | |    |||| ||||||||||||| ||||| |||| ||||||  |||| || ||| ||||||    
T  19312398 gacacgacaccgatacttataattacactgaatcatgtgatttttttttttaaattattagctgtgtcggtgtcgtgtccaatgtccgtgtctctatccg 19312299  T
Q  115 tgcttcatag 124  Q
    ||||||||||    
T  19312298 tgcttcatag 19312289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 26504306 - 26504358
Alignment:
Q  30 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    ||||| |||||||| |||||| ||| | |||||||||||||||||||||||||    
T  26504306 gacacatataattacactgaactatttgattttcttaaattattagcagtgtc 26504358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 35161095 - 35161031
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||| |||| ||||||||||| |||||||||| | |||||||| ||||| |||||||||| ||||    
T  35161095 cgactctgatacttataattacactgaattatgtgattttcttgaattagtagcagtgtcggtgt 35161031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 51701321 - 51701253
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||||||| |||||| |||||| ||| |||||| ||||||| | ||||||||||| ||||| ||||    
T  51701321 gacacgacactaacacttgtaattacactcaattatgtaattttttcaaattattagctgtgtccgtgt 51701253  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 3947762 - 3947825
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||||||||||| |||||| ||||||||||   ||||| | ||||||||||| |||||    
T  3947762 gacacgacactgacacttgtaattacactgaattatgcgattttttcaaattattagctgtgtc 3947825  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 7727961 - 7728036
Alignment:
Q  25 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 100  Q
    |||| ||||| |||||||||||||||| || | ||||||| || |||||| | ||||| |||| ||||||||||||    
T  7727961 acaccgacacctataattatactgaatcatgtcattttctcaacttattatcggtgtctgtgtcgtgtccggtgtc 7728036  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 8423718 - 8423777
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| |||| ||||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  8423718 cgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtc 8423777  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 13134513 - 13134450
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||  ||||| |||||||| ||| |||||| | ||||||||||||||| |||||||||    
T  13134513 gacacgacatcgacacatataattacactaaattatgtgattttcttaaattataagcagtgtc 13134450  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 23292986 - 23293045
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||| ||||||| ||||||||||||||||| | ||||| | ||||||||||| |||||    
T  23292986 cgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtc 23293045  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 37698758 - 37698719
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattag 75  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  37698758 tataattacactgaattatataattttctcaaattattag 37698719  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 38847012 - 38847071
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||||||| |||||| ||||||| |||| ||||| | ||||||||||| |||||    
T  38847012 cgacactgacacttgtaattacactgaataatatgattttttcaaattattagctgtgtc 38847071  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 49652985 - 49653024
Alignment:
Q  36 tataattatactgaattatataattttcttaaattattag 75  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  49652985 tataattatactgaattatctgattttcttaaattattag 49653024  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 20179401 - 20179364
Alignment:
Q  37 ataattatactgaattatataattttcttaaattatta 74  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  20179401 ataattatactgaattatatgattttcttaaactatta 20179364  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 30982874 - 30982931
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc 76  Q
    |||||||||| |||||||||||||| |||||| ||| | ||||||| |||| ||||||    
T  30982874 gacacgacaccgacacttataattacactgaaatatgtgattttctcaaatcattagc 30982931  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 2361975 - 2362039
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||| ||||||| |||||| ||| |||||| ||||||| | ||||||||||| ||||| ||||    
T  2361975 cgacaccgacacttttaattacactaaattatgtaattttttcaaattattagctgtgtcggtgt 2362039  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 10499336 - 10499383
Alignment:
Q  76 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||||||||||| ||||| |||||| |||||||||||| ||||||||||    
T  10499336 cagtgtcagtgt-gtgtctggtgtccgtatctgtatccatgcttcatag 10499383  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 68241 - 68293
Alignment:
Q  22 acgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    ||||||||||||| |||||||||||| |||||||| ||||||| |||||||||    
T  68241 acgacactgacacctataattatactaaattatatgattttctcaaattatta 68293  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 135308 - 135376
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    |||||||||| ||||| |||||||| || ||||||| | ||||||| ||||||||||||||||| ||||    
T  135308 gacacgacaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgt 135376  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 20235 - 20172
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  20235 gacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 20172  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 92862 - 92807
Alignment:
Q  27 actgacacttataattatactgaattatataattttcttaaattattagcagtgtc 82  Q
    |||||||||| |||||| |||||||||| ||||||||| ||||||||||| |||||    
T  92862 actgacacttgtaattacactgaattatgtaattttctcaaattattagcggtgtc 92807  T

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Target: scaffold0136 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 3846 - 3900
Alignment:
Q  20 acacgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    ||||||||||||||||| |||||| |||||||||| | ||||| |||||||||||    
T  3846 acacgacactgacacttgtaattacactgaattatgtgatttttttaaattatta 3900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 1098 - 1030
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||| |||||||||| |||| ||| |||||||||| ||||||| | ||||||||||| ||||| ||||    
T  1098 gacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 1030  T

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Target: scaffold1300 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 576 - 540
Alignment:
Q  87 ttgtgtccggtgtctgtatctgtatccgtgcttcata 123  Q
    |||||||||||||| ||||||||||||||||||||||    
T  576 ttgtgtccggtgtcggtatctgtatccgtgcttcata 540  T

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Target: scaffold0697 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 1703 - 1652
Alignment:
Q  23 cgacactgacacttataattatactgaattatataattttcttaaattatta 74  Q
    |||||| |||||||||||||||||  |||||||| ||||||| |||||||||    
T  1703 cgacaccgacacttataattataccaaattatatgattttctcaaattatta 1652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 53243 - 53189
Alignment:
Q  19 gacacgacactgacacttataattatactgaattatataattttcttaaattatt 73  Q
    |||||| ||| |||||||||||||| |||||||||| | ||||||| ||||||||    
T  53243 gacacggcaccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 6372 - 6307
Alignment:
Q  22 acgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 87  Q
    ||||||| ||||| |||||||| | ||||||||  |||||| | ||||||||||||||||| ||||    
T  6372 acgacaccgacacatataattacattgaattatgcaattttgtcaaattattagcagtgtccgtgt 6307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 9532 - 9484
Alignment:
Q  76 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 124  Q
    |||||||  |||||||||||||||| || |||||||| |||||||||||    
T  9532 cagtgtccatgttgtgtccggtgtccgtttctgtatctgtgcttcatag 9484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 23571 - 23539
Alignment:
Q  22 acgacactgacacttataattatactgaattat 54  Q
    |||||||||||||||||||||| ||||||||||    
T  23571 acgacactgacacttataattacactgaattat 23539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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