View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3937_low_3 (Length: 292)
Name: NF3937_low_3
Description: NF3937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3937_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 49170850 - 49170570
Alignment:
| Q |
1 |
ttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcagc |
100 |
Q |
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| T |
49170850 |
ttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcagc |
49170751 |
T |
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| Q |
101 |
attgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgattttgttccttctttactttgactgtagttcacaaatcttatt |
200 |
Q |
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| T |
49170750 |
attgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgtttttgttccttctttactttgactgtagttcacaaatcttatt |
49170651 |
T |
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| Q |
201 |
tttgtatatgttttgcagttatcagaggacaaaataaactggaaatacccaaattttgttcctgaatgcatttcatctcac |
281 |
Q |
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| T |
49170650 |
tttgtatatgttttgcagttatcagaggacaaaataaactggaaatacccaaattttgttcctgaatgcatttcatctcac |
49170570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 49179290 - 49179556
Alignment:
| Q |
15 |
ctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagctt |
114 |
Q |
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|||||||||||||||| || ||||| |||||||||| |||||| | ||||||| || ||||||||||||||||||||||||||||||||||| || || |
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| T |
49179290 |
ctctcctatatttcgaaacctaatcctccttcaattatgcatgtataactttcatcactgggatcatgtaatggaagtgcttcagcattgccctaatatt |
49179389 |
T |
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| Q |
115 |
caaattcttcttattctgaaggtttcttatgtttgtggattgattttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgtttt |
214 |
Q |
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| T |
49179390 |
caagttctcagaattaataaggtttcttatgtttgtggattgtttttgttccttctttacttcgactgtatttcacaaatcttatttttgtatatgtttt |
49179489 |
T |
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| Q |
215 |
gcagttatcagaggacaaaataaactggaaatacccaaattttgttcctgaatgcatttcatctcac |
281 |
Q |
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|||| | ||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49179490 |
gcagctgtcacccgacaatattaattggaaatacccaaattttgttcctgaatgcatttcgtctcac |
49179556 |
T |
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