View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3937_low_4 (Length: 242)
Name: NF3937_low_4
Description: NF3937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3937_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37815074 - 37815312
Alignment:
| Q |
1 |
tagctccaccaaaataaactggctgttatcgttcataacattcatcttaggataggttgaaataacgaaaactttatttataatcaaacagccaccttta |
100 |
Q |
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| T |
37815074 |
tagctccaccaaaataa-ctggctgttatcgttcataacattcatcttaggataggttgaaacaacgaaaactttatttataatcaaacagccaccttta |
37815172 |
T |
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| Q |
101 |
ttgtaaaattcaaggttaaccctaaattcaatttttaattttctaaccaattgatatgttatagaatttcttccattttcactatgaatgtttgaatgga |
200 |
Q |
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| T |
37815173 |
ttgtaaaattcaaggttaaccctaaattcaagttttaattttctaaccaatggatatgttatagaatttcttccattttcactatgaatgtttgaatgga |
37815272 |
T |
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| Q |
201 |
atggttacaaattacaatcagaaattccttcagccctatg |
240 |
Q |
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| T |
37815273 |
atggttacaaattacaatcagaaattccttcagccctatg |
37815312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 37645669 - 37645608
Alignment:
| Q |
76 |
atttataatcaaacagccacctttattgtaaaattcaaggttaaccctaaattcaattttta |
137 |
Q |
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| T |
37645669 |
atttataatgaaacagccacctttgttgtaaaattcaagtttaaccctaaattcaagtttta |
37645608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37645774 - 37645731
Alignment:
| Q |
1 |
tagctccaccaaaataaactggctgttatcgttcataacattcat |
45 |
Q |
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| T |
37645774 |
tagctccaccaaaataa-ctggctgttatcgttcataacattcat |
37645731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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