View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3938_high_13 (Length: 212)
Name: NF3938_high_13
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3938_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 34792389 - 34792588
Alignment:
| Q |
1 |
tataccgttgttttatcaggaataccataccctccgagtttaacactagatgttgtttctctaggagccaaaagaggaccagcaggatgcatcctcaaag |
100 |
Q |
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| T |
34792389 |
tataccgttgttttatcaggaataccataccctccgagtttaacactagatgttgtttctctaggagccaaaagaggaccagcaggatgcatcctcaaag |
34792488 |
T |
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| Q |
101 |
tttctttgatgacacatttcatgtactccatttgattgacatcaccgtcctctatttttgatttatt-ccctacaattctccttacctcctcctatgctt |
199 |
Q |
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| T |
34792489 |
tttctctgatgacacatttcatgtactccatttgattgacatcactgtcctctattttttatttattcccctacaattctccttacctcctcctgtgctt |
34792588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 34417763 - 34417565
Alignment:
| Q |
1 |
tataccgttgttttatcaggaataccataccctccgagtttaacactagatgttgtttctctaggagccaaaagaggaccagcaggatgcatcctcaaag |
100 |
Q |
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|||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |
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| T |
34417763 |
tataccattgttttatcaggaatatcatacccaccgagtttaacactagatgttgtttttctaggagccaaaagaggagcagctggatgcatcctcaaag |
34417664 |
T |
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| Q |
101 |
tttctttgatgacacatttcatgtactccatttgattgacatcaccgtcctctatttttgatttattccctacaattctccttacctcctcctatgctt |
199 |
Q |
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||||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34417663 |
tttctttaattacacatatcatgtactccatttgattgacatcactatcctctatttttgatttattccctacaattctccttacctcctcctgtgctt |
34417565 |
T |
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