View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3938_high_3 (Length: 339)

Name: NF3938_high_3
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3938_high_3
NF3938_high_3
[»] chr3 (32 HSPs)
chr3 (12-339)||(27389210-27389537)
chr3 (116-278)||(19483502-19483664)
chr3 (17-281)||(28084234-28084498)
chr3 (12-76)||(19483727-19483791)
chr3 (108-231)||(26113626-26113749)
chr3 (108-261)||(26140047-26140197)
chr3 (108-231)||(26202015-26202138)
chr3 (193-271)||(27349956-27350031)
chr3 (193-266)||(19477205-19477275)
chr3 (108-231)||(26128128-26128251)
chr3 (108-231)||(26178178-26178301)
chr3 (177-281)||(26630687-26630788)
chr3 (297-339)||(27390680-27390722)
chr3 (118-158)||(26233529-26233569)
chr3 (193-271)||(27379294-27379369)
chr3 (124-235)||(28003481-28003595)
chr3 (118-248)||(28036718-28036851)
chr3 (297-336)||(28149223-28149262)
chr3 (103-161)||(26129502-26129560)
chr3 (103-225)||(26179488-26179610)
chr3 (297-339)||(27350056-27350098)
chr3 (297-339)||(27379394-27379436)
chr3 (297-339)||(27979938-27979980)
chr3 (193-235)||(28005199-28005241)
chr3 (297-335)||(28054983-28055021)
chr3 (297-335)||(28065408-28065446)
chr3 (297-335)||(28083069-28083107)
chr3 (118-155)||(26111186-26111223)
chr3 (118-155)||(26205469-26205506)
chr3 (103-216)||(26235925-26236041)
chr3 (76-235)||(27459542-27459704)
chr3 (298-338)||(28005300-28005340)
[»] chr2 (2 HSPs)
chr2 (161-235)||(22399968-22400042)
chr2 (193-271)||(22394272-22394347)
[»] chr7 (1 HSPs)
chr7 (180-231)||(8692736-8692787)
[»] scaffold1142 (1 HSPs)
scaffold1142 (193-235)||(1421-1463)
[»] scaffold0257 (1 HSPs)
scaffold0257 (297-335)||(18644-18682)
[»] scaffold0043 (1 HSPs)
scaffold0043 (297-339)||(51992-52034)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 27389537 - 27389210
Alignment:
Q  12 tcatcaaaggtcaatactactctgtttattcataaatgtacttcttaatttggagtactgttctaagaattaaattttacatcaagtgcttcttacaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  27389537 tcatcaaaggtcaatactactctgtttattcataaatgtacttcttaatttggagtactgttcgaagaattaaatttcacatcaagtgcttcttacaaat 27389438  T
Q  112 atactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaaacaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27389437 atactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaaacaa 27389338  T
Q  212 agaatgagccacctatacaattagacgttgcacctaaacaaaaggtattttccctattttgcttctattcnnnnnnnnnnnnnnctcaatgcaggaattc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||    
T  27389337 agaatgagccacctatacaattagacgttgcacctaaacaaaaggtattttccctattttgcttctattctttttttactttttctcaatgcaggaattc 27389238  T
Q  312 aattatactacaatctgaaacatccttt 339  Q
    ||||||||||||||||||||||||||||    
T  27389237 aattatactacaatctgaaacatccttt 27389210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 116 - 278
Target Start/End: Complemental strand, 19483664 - 19483502
Alignment:
Q  116 tacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaaacaaagaa 215  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  19483664 tacaacttatttacattttcatgacatgcaattagttggaaggttcaacgttagaaaacacagaagcagcaacattttccaccatttcagaaacaaagaa 19483565  T
Q  216 tgagccacctatacaattagacgttgcacctaaacaaaaggtattttccctattttgcttcta 278  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19483564 tgtgccacctatacaattagacgttgcacctaaacaaaaggtattttccctattttgcttcta 19483502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 28084234 - 28084498
Alignment:
Q  17 aaaggtcaatactactctgtttattcataaatgtacttcttaatttggagtactgttctaagaattaaattttacatcaagtgcttcttacaaatatact 116  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||    | | | ||||||||   |  |||||||||| ||||||||||||||||||||    
T  28084234 aaaggtcaatactactctatttattcatatatgtacttgttaattgttcggagttttctaagataaatcttttacatcatgtgcttcttacaaatatact 28084333  T
Q  117 acaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaaacaaagaat 216  Q
    |||| | |||||||||||||||| || || |||| |||||||||||||||| |||||||||| |||||||| ||| ||||||||||||| ||||||||||    
T  28084334 acaattcatttacattttcatgctatacaattagttggaaggttcaacgtcagaaaacacagcagcagcaacattgtccaccatttcaggaacaaagaat 28084433  T
Q  217 gagccacctatacaattagacgttgcacctaaacaaaaggtattttccctattttgcttctattc 281  Q
    |||| ||||||||||||||||||||| ||||||||||||| || | ||||||||||||| |||||    
T  28084434 gagctacctatacaattagacgttgctcctaaacaaaaggcatatcccctattttgcttgtattc 28084498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 19483791 - 19483727
Alignment:
Q  12 tcatcaaaggtcaatactactctgtttattcataaatgtacttcttaatttggagtactgttcta 76  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  19483791 tcatcaaaggtcaatactactatgtttattcataaatgtacttcttaatttggagtaatgttcta 19483727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 26113749 - 26113626
Alignment:
Q  108 aaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaa 207  Q
    ||||||| | ||||| ||||||||||| |||| ||||||||||| ||||||||| || || ||||  |||||||||||||   |  |||||||| |||||    
T  26113749 aaatataatgcaactaatttacatttttatgctatgcatttagcaggaaggttctacatcagaaataacagaagcagcaactgtgcccaccattacagaa 26113650  T
Q  208 acaaagaatgagccacctatacaa 231  Q
    ||||||||| ||||||||| ||||    
T  26113649 acaaagaataagccacctacacaa 26113626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 26140197 - 26140047
Alignment:
Q  108 aaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaa 207  Q
    |||||| || ||||| | |||||||||||||| ||||||||||||||||||||| || || ||||   ||||||||||||   | |||| |||| |||||    
T  26140197 aaatatgctgcaactaaattacattttcatgctatgcatttagctggaaggttctacatcagaaatatcagaagcagcaactgtgtccatcattacagaa 26140098  T
Q  208 acaaagaatgagccacctatacaattagacgttgcacctaaacaaaaggtattt 261  Q
    ||||||||| ||| ||||| |||| ||   ||||  ||||||||||||||||||    
T  26140097 acaaagaataagctacctacacaagta---gttgatcctaaacaaaaggtattt 26140047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 26202138 - 26202015
Alignment:
Q  108 aaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaa 207  Q
    ||||||| | ||||| |||||||||||||||| ||||||| ||||||| ||||| || || ||||  |||| ||||||||   | ||||||||| |||||    
T  26202138 aaatataatgcaactaatttacattttcatgctatgcattcagctggagggttctacatcagaaataacagcagcagcaactgtgtccaccattacagaa 26202039  T
Q  208 acaaagaatgagccacctatacaa 231  Q
    ||||||||| ||| ||||| ||||    
T  26202038 acaaagaataagctacctacacaa 26202015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 27349956 - 27350031
Alignment:
Q  193 tccaccatttcagaaacaaagaatgagccacctatacaattagacgttgcacctaaacaaaaggtattttccctatttt 271  Q
    |||||||||||||||||||   ||||||||||||||||||||   ||||| ||||||||||||| |||| || ||||||    
T  27349956 tccaccatttcagaaacaatcgatgagccacctatacaatta---gttgctcctaaacaaaaggcatttcccttatttt 27350031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 19477205 - 19477275
Alignment:
Q  193 tccaccatttcagaaacaaagaatgagccacctatacaattagacgttgcacctaaacaaaaggtattttccct 266  Q
    |||||||||| ||||||||||||| ||||| |||| ||||||   ||||| |||||||||||||||||| ||||    
T  19477205 tccaccattttagaaacaaagaataagccaactatgcaatta---gttgctcctaaacaaaaggtatttgccct 19477275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 26128251 - 26128128
Alignment:
Q  108 aaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaa 207  Q
    ||||||| | ||||| |||||||||||||||| ||||| |||| | || ||||| || || ||||  |||| ||||||||   | ||||||||| |||||    
T  26128251 aaatataatgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaataacaggagcagcaactgtgtccaccattacagaa 26128152  T
Q  208 acaaagaatgagccacctatacaa 231  Q
    ||||||||| ||| ||||| ||||    
T  26128151 acaaagaataagctacctacacaa 26128128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 26178301 - 26178178
Alignment:
Q  108 aaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaa 207  Q
    ||||||| | ||||| |||||||||||||||| ||||| |||| | || ||||| || || ||||  |||| ||||||||   | ||||||||| |||||    
T  26178301 aaatataatgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaataacaggagcagcaactgtgtccaccattacagaa 26178202  T
Q  208 acaaagaatgagccacctatacaa 231  Q
    ||||||||| ||| ||||| ||||    
T  26178201 acaaagaataagctacctacacaa 26178178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 26630687 - 26630788
Alignment:
Q  177 agaagcagcaaaattttccaccatttcagaaacaaagaatgagccacctatacaattagacgttgcacctaaacaaaaggtattttccctattttgcttc 276  Q
    |||||||||||  || |||| |||||||| ||||||||||||| ||  | |||||||||   | || ||||||||||||| |||| |||||||||||||     
T  26630687 agaagcagcaagtttgtccatcatttcaggaacaaagaatgagacagatttacaattag---tggctcctaaacaaaaggcatttcccctattttgcttg 26630783  T
Q  277 tattc 281  Q
    |||||    
T  26630784 tattc 26630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 27390722 - 27390680
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatccttt 339  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  27390722 tcaatgcaggaattaaattatactacaatcttaaacatccttt 27390680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 26233569 - 26233529
Alignment:
Q  118 caacttatttacattttcatgccatgcatttagctggaagg 158  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  26233569 caactaatttacattttcatgcaatgcatttagctggaagg 26233529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 27379294 - 27379369
Alignment:
Q  193 tccaccatttcagaaacaaagaatgagccacctatacaattagacgttgcacctaaacaaaaggtattttccctatttt 271  Q
    |||||||||||||||||||   ||||||||||||||||||||   ||||| || |||||||||| |||| || ||||||    
T  27379294 tccaccatttcagaaacaatcgatgagccacctatacaatta---gttgctccgaaacaaaaggcatttcccttatttt 27379369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 28003481 - 28003595
Alignment:
Q  124 atttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaaaca---aagaatgagc 220  Q
    |||||||||||||||  ||||| | || |||| |||||||| || ||||| |  | |||| |||  || ||||||||||||||||||   ||||||||||    
T  28003481 atttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaaaatgtagcatcaactttgtccaccatttcagaaacaacaaagaatgagc 28003580  T
Q  221 cacctatacaattag 235  Q
     ||||||||||||||    
T  28003581 tacctatacaattag 28003595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 28036718 - 28036851
Alignment:
Q  118 caacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccatttcagaaacaaa---ga 214  Q
    ||||| |||||||||||||||  ||||| | || |||| |||||||| || ||||| |  | |||| |||  | |||||| |||||||||||||    ||    
T  28036718 caactaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaaaatgtagcatcaacttattccacaatttcagaaacaacaagga 28036817  T
Q  215 atgagccacctatacaattagacgttgcacctaa 248  Q
    |||||| |||| |||||||||||||||| |||||    
T  28036818 atgagctacctgtacaattagacgttgctcctaa 28036851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 28149223 - 28149262
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatcc 336  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  28149223 tcaatgcaggaattgaattatactacaatcttaaacatcc 28149262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 26129560 - 26129502
Alignment:
Q  103 cttacaaatatactacaacttatttacattttcatgccatgcatttagctggaaggttc 161  Q
    |||| |||||| || ||||| | |||||||||||||| ||||||||||||||| |||||    
T  26129560 cttaaaaatatgctgcaactaaattacattttcatgctatgcatttagctggagggttc 26129502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 26179610 - 26179488
Alignment:
Q  103 cttacaaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaacacagaagcagcaaaattttccaccattt 202  Q
    |||| |||||| || ||||| | |||||||||||||| ||||| |||| |||| ||||| || || ||||  |||| ||||||||   | |||||||||     
T  26179610 cttaaaaatatgctgcaactaacttacattttcatgcaatgcaattagttggagggttctacatcagaaataacagcagcagcaactgtgtccaccatta 26179511  T
Q  203 cagaaacaaagaatgagccacct 225  Q
    |||||||| | ||| ||||||||    
T  26179510 cagaaacagacaataagccacct 26179488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 27350056 - 27350098
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatccttt 339  Q
    ||||||||| |||| |||||||||||||||| |||||||||||    
T  27350056 tcaatgcagtaattgaattatactacaatcttaaacatccttt 27350098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 27379394 - 27379436
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatccttt 339  Q
    ||||||||| |||| |||||||||||||||| |||||||||||    
T  27379394 tcaatgcagtaattgaattatactacaatcttaaacatccttt 27379436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 27979938 - 27979980
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatccttt 339  Q
    |||||||||||||| | |||||||||||||| |||||||||||    
T  27979938 tcaatgcaggaattgagttatactacaatctcaaacatccttt 27979980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 28005199 - 28005241
Alignment:
Q  193 tccaccatttcagaaacaaagaatgagccacctatacaattag 235  Q
    ||||||||||||| |||||| |||||||| |||||||||||||    
T  28005199 tccaccatttcaggaacaaaaaatgagcctcctatacaattag 28005241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 28054983 - 28055021
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatc 335  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  28054983 tcaatgcaggaattgaattatactacaatcttaaacatc 28055021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 28065408 - 28065446
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatc 335  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  28065408 tcaatgcaggaattgaattatactacaatcttaaacatc 28065446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 28083069 - 28083107
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatc 335  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  28083069 tcaatgcaggaattgaattatactacaatcttaaacatc 28083107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 26111223 - 26111186
Alignment:
Q  118 caacttatttacattttcatgccatgcatttagctgga 155  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  26111223 caactaatttacattttcatgcaatgcatttagctgga 26111186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 26205506 - 26205469
Alignment:
Q  118 caacttatttacattttcatgccatgcatttagctgga 155  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  26205506 caactaatttacattttcatgcaatgcatttagctgga 26205469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 26236041 - 26235925
Alignment:
Q  103 cttacaaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaa--aaca-cagaagcagcaaaattttccacca 199  Q
    |||| |||||| || ||||| |||||||||||||||| ||||| |||| |||| ||||| || || |||  |||| ||||||||||||   | |||||||    
T  26236041 cttataaatatgctgcaactaatttacattttcatgcaatgcaattagttggagggttctacatcagaaataacagcagaagcagcaactgtgtccacca 26235942  T
Q  200 tttcagaaacaaagaat 216  Q
    || |||| |||||||||    
T  26235941 ttacagacacaaagaat 26235925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 235
Target Start/End: Complemental strand, 27459704 - 27459542
Alignment:
Q  76 aagaattaaattttacatcaagtgcttcttacaaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaaca 175  Q
    ||||| |||||||||| |||| | || |||| |||||   | ||||| |||||||||||||||  |||||   || |||| ||||||||||| ||||| |    
T  27459704 aagaaataaattttacttcaaatactacttaaaaataagttgcaactaatttacattttcatgttatgcaagcagttggagggttcaacgtcagaaaaaa 27459605  T
Q  176 cagaagcagcaaaattttccaccatttcaga---aacaaagaatgagccacctatacaattag 235  Q
      | |||| |||  || || |||||||||||   ||||| |||||||| ||||||||||||||    
T  27459604 atgtagcatcaactttgtcgaccatttcagaaacaacaaggaatgagctacctatacaattag 27459542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 28005300 - 28005340
Alignment:
Q  298 caatgcaggaattcaattatactacaatctgaaacatcctt 338  Q
    ||||| ||||||| |||||||||||||||| ||||||||||    
T  28005300 caatgtaggaattgaattatactacaatctcaaacatcctt 28005340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 22399968 - 22400042
Alignment:
Q  161 caacgtcggaaaacacagaagcagcaaaattttccaccatttcagaaacaaagaatgagccacctatacaattag 235  Q
    ||||||| ||||| |||| ||||||||  ||||||||||||| ||  |||| |||||||||||||||||||||||    
T  22399968 caacgtcagaaaaaacagcagcagcaactttttccaccattttaggtacaaggaatgagccacctatacaattag 22400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 22394272 - 22394347
Alignment:
Q  193 tccaccatttcagaaacaaagaatgagccacctatacaattagacgttgcacctaaacaaaaggtattttccctatttt 271  Q
    |||||||||||||||||||   |||||| |||||||||||||   ||||| ||||||||||||| |||| || ||||||    
T  22394272 tccaccatttcagaaacaatcgatgagctacctatacaatta---gttgctcctaaacaaaaggcatttcccttatttt 22394347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 8692787 - 8692736
Alignment:
Q  180 agcagcaaaattttccaccatttcagaaacaaagaatgagccacctatacaa 231  Q
    ||||| || ||| |||||| |||||| |||||||||||||||||||||||||    
T  8692787 agcagaaacattgtccaccttttcagtaacaaagaatgagccacctatacaa 8692736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 1421 - 1463
Alignment:
Q  193 tccaccatttcagaaacaaagaatgagccacctatacaattag 235  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  1421 tccaccatttcaggaacaatcaatgagccacctatacaattag 1463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 18644 - 18682
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatc 335  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  18644 tcaatgcaggaattgaattatactacaatcttaaacatc 18682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 52034 - 51992
Alignment:
Q  297 tcaatgcaggaattcaattatactacaatctgaaacatccttt 339  Q
    ||||||||| |||| |||||||||||||||| |||||||||||    
T  52034 tcaatgcagtaattgaattatactacaatcttaaacatccttt 51992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University