View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3938_high_5 (Length: 326)
Name: NF3938_high_5
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3938_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 10318486 - 10318807
Alignment:
| Q |
1 |
ttcttctcctcacctgatagtccttagaacaaaccaatattgaacttgaaagaagcttagcttcgagtgattctgatacttctgaattcctcgaaagtaa |
100 |
Q |
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| T |
10318486 |
ttcttctcctcacctgatagtccttagaacaaaccaatattgaacttgaaagaagcttagcttcgagtgattctgatacttctgaattcctcgaaagtaa |
10318585 |
T |
|
| Q |
101 |
atctattaatttcttctcatactttgttgcagcatctgaaactttcttttcatggattttgttgaaaagaagccatctatcttccttccaagccgtatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10318586 |
atctattaatttcttctcatactttgttgcagcatctgatactttcttttcatggattttgttgaaaagaagccatctatcttccttccaagccgtatca |
10318685 |
T |
|
| Q |
201 |
tagcggttgcacaaatcctgagtaatgaggtactgcttcccaaatttccacttgaaaagcttcatgtctctaaattcttttctatacttattggaattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10318686 |
tagcggttgcacaaatcctgagtaatgaggtactgcttcccaaatttccacttgaaaagcttcatgtctctaaattcttttctatacttattggaattga |
10318785 |
T |
|
| Q |
301 |
taagcctcttcctttgcttctc |
322 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
10318786 |
taagcctcttcctttgcatctc |
10318807 |
T |
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