View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3938_high_7 (Length: 319)
Name: NF3938_high_7
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3938_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 36978013 - 36978304
Alignment:
| Q |
13 |
taggtagtttgtgaagttggcaatccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaag |
112 |
Q |
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| T |
36978013 |
taggtagtttgtgaagttggcaacccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcatgaaaccaatcattttgacaacgactaag |
36978112 |
T |
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| Q |
113 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattca |
212 |
Q |
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| T |
36978113 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatgaagtgattca |
36978212 |
T |
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| Q |
213 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcatagtacttag |
304 |
Q |
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| T |
36978213 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcatagtacttag |
36978304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 36966271 - 36966554
Alignment:
| Q |
13 |
taggtagtttgtgaagttggcaatccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaag |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| || || |||||||||||||||| ||||| |||||| |
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| T |
36966271 |
taggtagtttgtgaagttggcaacccgataaacgcaatgtttcaagagaatgaagtattgctcttatatcatgaaaccaatcattttcacaactactaag |
36966370 |
T |
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| Q |
113 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattca |
212 |
Q |
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| T |
36966371 |
atcaacaccacttaaatcgagaattttcatggaagaaagtccttgaagccattttagattattgacatagaaagcattgccactcaaatcaagtgattca |
36966470 |
T |
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| Q |
213 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcata |
296 |
Q |
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|||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36966471 |
agtagagacaggtttacaagattatcagagaggttgcccttaaaattggcatgagataggtcaagatgttttaaattttgcata |
36966554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 5867058 - 5866767
Alignment:
| Q |
13 |
taggtagtttgtgaagttggcaatccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaag |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5867058 |
taggtagtttgtgaagttggcaacccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcatgaaaccaatcattttgacaacgactaag |
5866959 |
T |
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| Q |
113 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattca |
212 |
Q |
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| T |
5866958 |
aacaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgtcactcaaatcaagtgattca |
5866859 |
T |
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| Q |
213 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcatagtacttag |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5866858 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcgtagtacttag |
5866767 |
T |
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