View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3938_high_8 (Length: 310)
Name: NF3938_high_8
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3938_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 32348163 - 32348462
Alignment:
| Q |
13 |
aatatattcaacccaaaattaaatatatataaaaatcacttatttaaatagaatagaatgnnnnnnnctatttagacggtgatgagaaaaacgattatga |
112 |
Q |
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| T |
32348163 |
aatatatttaactcaaaattaaatatatgtaaaaatcacttatttaaatagaatagaattgaaaaaactacttagacggtgatgagaaaaatgattatga |
32348262 |
T |
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| Q |
113 |
---agcttagccaataattttaaattgattttctaaaaattcaatattgggtcgaataaccaattcaattgaaagacaaattttgtcaaccactaacgag |
209 |
Q |
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| T |
32348263 |
tgtagcttagccaataattttaaattgattttctaaaaattcaatattgagtcgaataaccaattcaattgaaagacaaattttgtcaaccactaacgag |
32348362 |
T |
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| Q |
210 |
ggttcaattaaaatcagaacaaaagtttatatcaacttgtccacgtaaataagtatccaaaggatttgaatcaaagacattaagaaatattctccaacat |
309 |
Q |
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| T |
32348363 |
ggttcaattaaaatcagaacaaaattttatatcaacttgtccacgtaaataagtatccaaaggatttgaatcaaagacattaagaaatattctccaacat |
32348462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 11165077 - 11165042
Alignment:
| Q |
27 |
aaaattaaatatatataaaaatcacttatttaaata |
62 |
Q |
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| T |
11165077 |
aaaattaaataaatataaaaatcacttatttaaata |
11165042 |
T |
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