View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3938_low_10 (Length: 237)
Name: NF3938_low_10
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3938_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 720884 - 720673
Alignment:
| Q |
1 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagagggatgaagaatgggatcagctgccatatattagtgaatatatttattatttaat |
100 |
Q |
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||||||||||||| | ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
720884 |
cttgtacttttccaggacctgcaaattccaaattcaagaccaagaggggtgaggaatgggatcagctgccatatattagtgaatatatt----atttaat |
720789 |
T |
|
| Q |
101 |
ttacacctaatcactannnnnnnncttcaagtaatcacgaatttttgaacagcaaataaagcaccactatattatacatatataaaagaaaacaattaaa |
200 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
720788 |
ttaaacctaatcactattttttttcttcaagtaatcacgaatttttgaacagcaaataaagcaccactatattatacatatataaaagaaaacaattaaa |
720689 |
T |
|
| Q |
201 |
gagataactcaaccca |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
720688 |
gagataactcaaccca |
720673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38880109 - 38880040
Alignment:
| Q |
1 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagagggatgaagaatgggatcagctgcc |
70 |
Q |
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||||||||||| | |||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
38880109 |
cttgtactttttcagaacttgcaaattccaaatccaagaccaagaggggtgaggaatgagatcagctgcc |
38880040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23946120 - 23946051
Alignment:
| Q |
1 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagagggatgaagaatgggatcagctgcc |
70 |
Q |
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| T |
23946120 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagaggggtgagggatgatatcagctgcc |
23946051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45211630 - 45211677
Alignment:
| Q |
1 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagaggg |
48 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45211630 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagaggg |
45211677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33805320 - 33805273
Alignment:
| Q |
1 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagaggg |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33805320 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagaggg |
33805273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 11239523 - 11239460
Alignment:
| Q |
5 |
tacttttccggaacctgcaaattccaaatccaagaccaagagggatgaagaatgggatcagctg |
68 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
11239523 |
tacttttccgggacctttaacctccaaatccaagaccaagagtgatgaggaatgggattagctg |
11239460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37145001 - 37144954
Alignment:
| Q |
1 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagaggg |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37145001 |
cttgtacttttccggaacctgcaaattccaaatccaagaccaagaggg |
37144954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 23425842 - 23425799
Alignment:
| Q |
2 |
ttgtacttttccggaacctgcaaattccaaatccaagaccaaga |
45 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
23425842 |
ttgtacttctccggaacctgcaatgtccaaatccaagaccaaga |
23425799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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