View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3938_low_12 (Length: 216)
Name: NF3938_low_12
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3938_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 356451 - 356261
Alignment:
| Q |
10 |
acatcatcatgatttaaatgtcatgcagaatcagaccctacaacaaaggcagagctagcaccaacctcaggaaaatcattggcagcaactgcattagcct |
109 |
Q |
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| T |
356451 |
acatgatcatgatttaaatgtcgtgcagagtcagactctacaacaaaggcagagctagcaccaacctcaggaaaatcattggcagcaaatgcattagcct |
356352 |
T |
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| Q |
110 |
tgcttgcataatccaatgtcttagggtcaaaagttgaatccttaccagcatctaccgtagaacctctggccaaatcagtgtgattgatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
356351 |
tgcttgcataatccaatgtcttagggtcaaaagttgaatccttaccagcatctaccatagaacctctggccaaatcagtgtgattgatctt |
356261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 10582492 - 10582306
Alignment:
| Q |
14 |
catcatgatttaaatgtcatgcagaatcagaccctacaacaaaggcagagctagcaccaacctcaggaaaatcattggcagcaactgcattagccttgct |
113 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |
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| T |
10582492 |
catcatgatttaaatgttgtgcagaatcagactctacaacaaaggcagagctagcaccaacctcaggaaaataattggcagcaactacatcagccttgct |
10582393 |
T |
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| Q |
114 |
tgcataatccaatgtcttagggtcaaaagttgaatccttaccagcatctaccgtagaacctctggccaaatcagtgtgattgatctt |
200 |
Q |
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|||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10582392 |
tgcaaaatccagtgtctaagggtcaaaagttgaatccttaccagcatctaccgttgaacctctggccaaatcagtgtgattgatctt |
10582306 |
T |
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