View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3938_low_2 (Length: 551)

Name: NF3938_low_2
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3938_low_2
NF3938_low_2
[»] chr3 (9 HSPs)
chr3 (13-534)||(27388712-27389233)
chr3 (193-344)||(19483343-19483494)
chr3 (417-534)||(19483176-19483301)
chr3 (13-151)||(27979957-27980095)
chr3 (13-126)||(28084533-28084646)
chr3 (13-151)||(28005318-28005456)
chr3 (13-142)||(27379413-27379539)
chr3 (221-308)||(27379633-27379716)
chr3 (283-325)||(28084773-28084815)
[»] scaffold1163 (1 HSPs)
scaffold1163 (13-170)||(1-158)
[»] scaffold0043 (2 HSPs)
scaffold0043 (13-170)||(51858-52015)
scaffold0043 (360-447)||(51694-51780)
[»] chr2 (2 HSPs)
chr2 (13-150)||(22394391-22394528)
chr2 (432-534)||(22394781-22394889)
[»] scaffold1805 (1 HSPs)
scaffold1805 (93-170)||(1094-1171)
[»] scaffold1142 (1 HSPs)
scaffold1142 (13-142)||(1540-1666)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 13 - 534
Target Start/End: Complemental strand, 27389233 - 27388712
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27389233 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 27389134  T
Q  113 actcatttagtaagttcatcaccaatttatcgtatgtaacaagtgtcggcccaatatagtctcgcgcctgatatattttatttaaaatttattttttaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27389133 actcatttagtaagttcatcaccaatttatcgtatgtaacaagtgtcggcccaatatagtctcgcgcctgatatattttatttaaaatttattttttaag 27389034  T
Q  213 aatatggcttgatgacattccaactatgttgacatcccatcaaatcaacaattatctacaacaccctaattaaaaatattattgataggaaataaataaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27389033 aatatggcttgatgacattccaactatgttgacatcccatcaaatcaacaattatctacaacaccctaattaaaaatattattgataggaaataaataaa 27388934  T
Q  313 acaaaatgatggggggaacaccaacacattaattaaagaaaacagctaaatataaagttaaggagactggatctattacgaatagagatatccataatat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27388933 acaaaatgatggggggaacaccaacacattaattaaagaaaacagctaaatataaagttaaggagactggatctattacgaatagagatatccataatat 27388834  T
Q  413 aaaatggcaatgaatcttaccaaattaccttattacattgaaaacatatgttggctaacttatcagcagcacaattgttgctttccttattttggatatc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27388833 aaaatggcaatgaatcttaccaaattaccttattacattgaaaacatatgttggctaacttatcagcagcacaattgttgctttccttattttggatatc 27388734  T
Q  513 atttgtttattaatttcaattg 534  Q
    ||||||||||||||||||||||    
T  27388733 atttgtttattaatttcaattg 27388712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 193 - 344
Target Start/End: Complemental strand, 19483494 - 19483343
Alignment:
Q  193 tttaaaatttattttttaagaatatggcttgatgacattccaactatgttgacatcccatcaaatcaacaattatctacaacaccctaattaaaaatatt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |    
T  19483494 tttaaaatttattttttaagaatatggcttgatgacattccaactatgtagacatccaatcaaatcaacaattatctagaacaccctaattaaaaatact 19483395  T
Q  293 attgataggaaataaataaaacaaaatgatggggggaacaccaacacattaa 344  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||||||    
T  19483394 attgataggaaatgaataaaacaaaatgatggggggaacatcaacccattaa 19483343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 534
Target Start/End: Complemental strand, 19483301 - 19483176
Alignment:
Q  417 tggcaatgaatcttaccaaattaccttattacattgaaaacatatgttggctaacttatcagcagcacaattgttgctttccttattt--------tgga 508  Q
    ||||||||||||||| |||||||||| |||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||         |||    
T  19483301 tggcaatgaatcttaacaaattacctcattacattgaaaacctgtattggccaacttatcagcagcacaattgttgctttccttatttcggagataagga 19483202  T
Q  509 tatcatttgtttattaatttcaattg 534  Q
    ||||||||||||||||||||||||||    
T  19483201 tatcatttgtttattaatttcaattg 19483176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 27979957 - 27980095
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| ||||||||||||||| || | ||||||| | ||||| || || ||||| |||||||||  |||  ||| ||| ||||||||||||||    
T  27979957 atactacaatctcaaacatccttttaattttaagcagggtatcgagataagtgttgaagaaggaactacattaactcgtgaaaaaacaataacatcatca 27980056  T
Q  113 actcatttagtaagttcatcaccaatttatcgtatgtaa 151  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  27980057 actcatttagtaagttcatcaccaacttatagtatgtaa 27980095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 28084533 - 28084646
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| || ||||||||||||||||| |||||||  |||||| ||||| ||||| |||||||||| ||| |||||||| ||||||||||||||    
T  28084533 atactacaatcttaagcatccttttaatatttagcagggtatgaagataagttttgaagaaggaactacatcaacttatgacaaaacaataacatcatca 28084632  T
Q  113 actcatttagtaag 126  Q
    ||||||| ||||||    
T  28084633 actcattcagtaag 28084646  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 28005318 - 28005456
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| |||||||||| |||| || | ||||||| | ||| | || || ||||| |||||||||| |||  ||| ||| |||||||||| |||    
T  28005318 atactacaatctcaaacatccttctaattttaagcagggtatcgagaaaagtgttgaagaaggaactacatcaacttgtgaaaaaacaataacatcgtca 28005417  T
Q  113 actcatttagtaagttcatcaccaatttatcgtatgtaa 151  Q
    ||||||||||||||||| ||||||| |||| ||||||||    
T  28005418 actcatttagtaagttcctcaccaacttatagtatgtaa 28005456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 27379413 - 27379539
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| |||||||||||||||||||| ||||||||  ||||| ||| | ||||| |||||||||| |||  |||||||  |||||   |||||    
T  27379413 atactacaatcttaaacatccttttaatatttagcagggtaatgagataagttctgaagaaggaactacatcaacttgtgacaaaagaataa---catca 27379509  T
Q  113 actcatttagtaagttcatcaccaatttat 142  Q
     |||||||||||||||| ||||||| ||||    
T  27379510 gctcatttagtaagttcgtcaccaacttat 27379539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 27379633 - 27379716
Alignment:
Q  221 ttgatgacattccaactatgttgacatcccatcaaatcaacaattatctacaacaccctaattaaaaatattattgataggaaataaa 308  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||     |||||||||| ||||| ||||||||    
T  27379633 ttgatgacatttcaactatgttgacaccccatcaaaccaacaatcatctacaacaccc----aaaaaatattaatgataagaaataaa 27379716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 28084773 - 28084815
Alignment:
Q  283 taaaaatattattgataggaaataaataaaacaaaatgatggg 325  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  28084773 taaaaatattattgataagaaataaagaaaacaaaatgatggg 28084815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 1 - 158
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| |||||||||||||||||||| ||||||| | ||||| ||||| ||||| |||||||||| |||  ||||||| ||||||||||||||    
T  1 atactacaatcttaaacatccttttaatatttagcagggtagcgagataagttttgaagaaggaactacatcaacttgtgacaaaacaataacatcatca 100  T
Q  113 actcatttagtaagttcatcaccaatttatcgtatgtaacaagtgtcggcccaatata 170  Q
    ||||||||||||||||| ||||||  |||| |||||| ||||| | ||| ||||||||    
T  101 actcatttagtaagttcgtcaccatcttatagtatgtcacaagggccggtccaatata 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 52015 - 51858
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| |||||||||||||||||||| ||||||| | ||||| ||||| ||||| |||||||||| |||  ||||||| ||||||||||||||    
T  52015 atactacaatcttaaacatccttttaatatttagcagggtagcgagataagttttgaagaaggaactacatcaacttgtgacaaaacaataacatcatca 51916  T
Q  113 actcatttagtaagttcatcaccaatttatcgtatgtaacaagtgtcggcccaatata 170  Q
    |||||||||||||||||||| |||  |||| |||||| ||||| | ||| ||||||||    
T  51915 actcatttagtaagttcatcgccatcttatagtatgtcacaagggccggtccaatata 51858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 447
Target Start/End: Complemental strand, 51780 - 51694
Alignment:
Q  360 aaatataaagttaaggagactggatctattacgaatagagatatccataatataaaatggcaatgaatcttaccaaattaccttatta 447  Q
    |||||||| ||||||| ||| | |||||||| ||| | || ||||||||||| ||  ||||||||||||| |||||||||||| ||||    
T  51780 aaatataatgttaaggtgaccgaatctattatgaaaa-agttatccataatacaatttggcaatgaatctcaccaaattacctcatta 51694  T

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Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 22394391 - 22394528
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| |||||| |||||||| |||| ||||||||  ||||| ||||| ||||| |||| ||||| |||  ||||||| ||||||||||| ||    
T  22394391 atactacaatcttaaacatgcttttaatgtttagcagggtaatgagataagttttgaagaaggaacaacatcaacttgtgacaaaacaataacatcagca 22394490  T
Q  113 actcatttagtaagttcatcaccaatttatcgtatgta 150  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  22394491 actcatttagtaagttcatcaccaacttatagtatgta 22394528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 534
Target Start/End: Original strand, 22394781 - 22394889
Alignment:
Q  432 ccaaattaccttattacattgaaaacatatgttggctaacttatcagcagcacaattgttgctttccttatttt-------ggatatcatttgtttatta 524  Q
    ||||||||||| |||| ||| ||||| ||||||||| ||| ||||| || |||||||||||| |||||||||||       |||||| ||||||||||||    
T  22394781 ccaaattacctcatta-atttaaaacttatgttggccaacatatcaacaccacaattgttgccttccttattttaaaataaggatataatttgtttatta 22394879  T
Q  525 atttcaattg 534  Q
    ||||||||||    
T  22394880 atttcaattg 22394889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 1094 - 1171
Alignment:
Q  93 acaaatcaataacatcatcaactcatttagtaagttcatcaccaatttatcgtatgtaacaagtgtcggcccaatata 170  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||| || || ||||||||    
T  1094 acaaaacaataacatcatcaactcatttagtaagttcatcaccaacttatagtatggagcaagggttggtccaatata 1171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 1540 - 1666
Alignment:
Q  13 atactacaatctgaaacatccttttaatatttaacagggtaacaagatatgttttcaagaacgaactacatctactgatgacaaatcaataacatcatca 112  Q
    |||||||||||| |||||| |||||| | |||| ||||||||| ||||  || || ||||| |||||||||| |||  |||||||  |||||   |||||    
T  1540 atactacaatcttaaacattcttttattgtttagcagggtaacgagatgagtgttgaagaaggaactacatcaacttgtgacaaaaaaataa---catca 1636  T
Q  113 actcatttagtaagttcatcaccaatttat 142  Q
    ||||||||||||||||| ||||||| ||||    
T  1637 actcatttagtaagttcgtcaccaacttat 1666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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