View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3938_low_7 (Length: 325)
Name: NF3938_low_7
Description: NF3938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3938_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 4761695 - 4761994
Alignment:
| Q |
12 |
agagagtttgagagcattggcagttgaagaagcccacatcctcagtgccattgttaagactacttctgcttctttgtgttgtgtttgtgataggagtaca |
111 |
Q |
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| T |
4761695 |
agagagtttgagagcattggcagttgaagaagcccacatcctcagtgccattgttaagactacttctgcttctttgtgttgtgtttgtgataagagtaca |
4761794 |
T |
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| Q |
112 |
aataataataaaaatatcaatgaaatgatgagatagatagaggtgttgaatgtatgtgtgtttgtgtgttttccttttcccaaaatattatcttggatgt |
211 |
Q |
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| T |
4761795 |
aataataataaaaatatcaatgaaatgatgagatagatagaggtgttgaatgtatgtgtgtttgtgtgttttccttttcccaaaatattatcttggatgt |
4761894 |
T |
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| Q |
212 |
atggtgagcaacgaatgcctcatcctttatttgtacactctcatcctcttttactttacaccaacaccacttttttatgtacaaactttataacagcact |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4761895 |
atggtgagcaacgaatgcctcatcctttatttgtacactctcatcctcttttactttacaccaacaccactttttcatgtacaaactttataacagcact |
4761994 |
T |
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