View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3939_high_10 (Length: 314)

Name: NF3939_high_10
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3939_high_10
NF3939_high_10
[»] chr8 (14 HSPs)
chr8 (86-296)||(36678750-36678962)
chr8 (18-77)||(1588825-1588884)
chr8 (22-77)||(2800081-2800136)
chr8 (18-77)||(10292410-10292469)
chr8 (22-77)||(10310344-10310399)
chr8 (22-77)||(35253802-35253857)
chr8 (34-77)||(18009693-18009736)
chr8 (22-77)||(31129364-31129419)
chr8 (24-77)||(38790550-38790603)
chr8 (22-77)||(2696595-2696650)
chr8 (22-77)||(7314795-7314850)
chr8 (22-77)||(35301141-35301196)
chr8 (22-68)||(43508435-43508481)
chr8 (24-77)||(22426465-22426518)
[»] scaffold0308 (1 HSPs)
scaffold0308 (22-77)||(7138-7193)
[»] chr5 (11 HSPs)
chr5 (22-77)||(20735153-20735208)
chr5 (22-77)||(1463933-1463988)
chr5 (24-77)||(37417108-37417161)
chr5 (25-77)||(18303056-18303108)
chr5 (22-69)||(36045120-36045167)
chr5 (22-76)||(38230184-38230238)
chr5 (22-59)||(4674811-4674848)
chr5 (18-59)||(6447476-6447517)
chr5 (22-63)||(25346246-25346287)
chr5 (18-71)||(7988906-7988959)
chr5 (23-77)||(37303997-37304050)
[»] chr4 (16 HSPs)
chr4 (22-77)||(8690276-8690331)
chr4 (22-77)||(9693024-9693079)
chr4 (22-77)||(14149855-14149910)
chr4 (22-77)||(28520709-28520764)
chr4 (22-77)||(48968188-48968243)
chr4 (18-77)||(15640421-15640480)
chr4 (22-77)||(36954199-36954254)
chr4 (22-77)||(53815758-53815813)
chr4 (22-63)||(46799469-46799510)
chr4 (24-77)||(52031271-52031324)
chr4 (22-77)||(40150535-40150590)
chr4 (22-71)||(7768772-7768821)
chr4 (22-57)||(52330907-52330942)
chr4 (22-77)||(53354944-53354999)
chr4 (22-71)||(42411437-42411487)
chr4 (25-77)||(48501636-48501688)
[»] chr3 (16 HSPs)
chr3 (22-77)||(27183659-27183714)
chr3 (22-77)||(9625045-9625100)
chr3 (25-77)||(36476424-36476476)
chr3 (22-77)||(10959195-10959250)
chr3 (22-77)||(24559451-24559506)
chr3 (20-63)||(42823977-42824020)
chr3 (22-77)||(52030183-52030238)
chr3 (26-76)||(32453502-32453552)
chr3 (22-71)||(24136734-24136785)
chr3 (25-68)||(14868750-14868793)
chr3 (27-77)||(7448341-7448391)
chr3 (27-77)||(7456483-7456533)
chr3 (25-63)||(38555020-38555058)
chr3 (29-77)||(44671538-44671586)
chr3 (18-77)||(50724425-50724484)
chr3 (18-77)||(50788364-50788423)
[»] chr2 (7 HSPs)
chr2 (22-77)||(43871015-43871070)
chr2 (22-71)||(29035038-29035087)
chr2 (22-77)||(34034412-34034467)
chr2 (22-77)||(2304352-2304407)
chr2 (24-63)||(36106884-36106923)
chr2 (24-63)||(44187768-44187807)
chr2 (23-68)||(23405262-23405309)
[»] chr1 (16 HSPs)
chr1 (22-77)||(13870059-13870114)
chr1 (22-77)||(40678885-40678940)
chr1 (18-77)||(47763363-47763422)
chr1 (22-71)||(17350123-17350172)
chr1 (22-71)||(17954843-17954892)
chr1 (25-77)||(35111714-35111766)
chr1 (22-77)||(39238778-39238833)
chr1 (22-71)||(19976536-19976585)
chr1 (22-77)||(25819247-25819302)
chr1 (22-76)||(52833085-52833139)
chr1 (22-63)||(29106860-29106901)
chr1 (22-71)||(29491532-29491580)
chr1 (37-77)||(2044942-2044982)
chr1 (22-61)||(38021314-38021353)
chr1 (34-63)||(19516480-19516509)
chr1 (22-71)||(29936663-29936714)
[»] chr6 (8 HSPs)
chr6 (23-77)||(14981680-14981734)
chr6 (22-76)||(29284180-29284234)
chr6 (22-71)||(33628925-33628974)
chr6 (24-77)||(9064930-9064983)
chr6 (29-76)||(24470370-24470417)
chr6 (22-77)||(11636748-11636803)
chr6 (22-63)||(6144026-6144067)
chr6 (22-71)||(6658527-6658576)
[»] scaffold0809 (1 HSPs)
scaffold0809 (22-71)||(4790-4839)
[»] scaffold0070 (1 HSPs)
scaffold0070 (18-69)||(12623-12674)
[»] chr7 (10 HSPs)
chr7 (23-77)||(24397008-24397062)
chr7 (24-63)||(31475832-31475871)
chr7 (24-67)||(41417263-41417306)
chr7 (18-77)||(47635108-47635166)
chr7 (25-63)||(14818357-14818395)
chr7 (25-63)||(15265355-15265393)
chr7 (22-59)||(19126799-19126836)
chr7 (34-71)||(41139161-41139198)
chr7 (25-63)||(24304275-24304313)
chr7 (22-58)||(28914874-28914910)
[»] scaffold0227 (1 HSPs)
scaffold0227 (25-77)||(21914-21965)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 86 - 296
Target Start/End: Original strand, 36678750 - 36678962
Alignment:
Q  86 tagtatgtgtcacttatccaatatattagatatgatgaaaaaatgaagaaataaacaatttgacacttttttacgtctgtgtcacttatccaatat--at 183  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||    
T  36678750 tagtatgtgtcacttatccaatatataagatatgatgaaaaaatgaagaaataaacaatttgatacttttttacgtctgtgtcacttatccaatatatat 36678849  T
Q  184 actatacagcaattaacaaatctgccccaccatatgttaataagtgtcacccaattgtctacattatgccaacatatgttttcttggctttcttacaaaa 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678850 actatacagcaattaacaaatctgccccaccatatgttaataagtgtcacccaattgtctacattatgccaacatatgttttcttggctttcttacaaaa 36678949  T
Q  284 cacgtgctatctc 296  Q
    |||||||||||||    
T  36678950 cacgtgctatctc 36678962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 1588825 - 1588884
Alignment:
Q  18 acctcggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || |||| |||||    
T  1588825 acctcggacaccccacttattcactttaaaagtgaatttctagccactatgctacctgac 1588884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 2800081 - 2800136
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  2800081 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 2800136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 10292410 - 10292469
Alignment:
Q  18 acctcggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||    
T  10292410 acctcggacaccccacttattcactttaaaagtgaatttctagccactagactacctgac 10292469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 10310344 - 10310399
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  10310344 cggacaccccacttattcactttaaaagtgaatttctagccattagactatctgac 10310399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 35253857 - 35253802
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  35253857 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 35253802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 18009736 - 18009693
Alignment:
Q  34 ttattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  18009736 ttattcactttaaaagtgaatttctagccattaggctacctgac 18009693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 31129364 - 31129419
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||    
T  31129364 cggacaccccacttattcactttaaaagtgaatttttagccactaggctacctgac 31129419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 38790603 - 38790550
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||| ||||||||||||||||||||||||||| || ||||||| |||||    
T  38790603 gacaccccacttattcactttaaaagtgaatttctaggcactaggctacctgac 38790550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 2696595 - 2696650
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||  ||| ||||||| |||||    
T  2696595 cggacaccccacttattcactttaaaagtgaatttctgaccactaggctacctgac 2696650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 7314795 - 7314850
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||| |||| || ||||||| |||||    
T  7314795 cggacaccccacttattcactttaaaagtgaattcctagtcactaggctatctgac 7314850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 35301196 - 35301141
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||| ||| |||||    
T  35301196 cggacaccctacttattcactttaaaagtgaatttctagccactagactacctgac 35301141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 43508481 - 43508435
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattagg 68  Q
    ||||||||||| |||||||| ||||| ||||||||||||||| ||||    
T  43508481 cggacaccccacttattcaccttaaaggtgaatttctagccactagg 43508435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 22426465 - 22426518
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||| ||||||||||||||||||||||  || ||| ||||||| |||||    
T  22426465 gacaccccatttattcactttaaaagtgaattcttaaccactaggctacctgac 22426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 7138 - 7193
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  7138 cggacaccccatttattcactttaaaagtgaatttctagccactaggctacctgac 7193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 20735208 - 20735153
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  20735208 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 20735153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 1463933 - 1463988
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||    
T  1463933 cggacaccccacttattcactttaaaagtgaatttctagccaccaggctacctgac 1463988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 37417161 - 37417108
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||    
T  37417161 gacaccccacttactcactttaaaagtgaatttctagccactaggctatctgac 37417108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 18303108 - 18303056
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||| |||||||||||||||||||||||||||||| ||| ||| |||||    
T  18303108 acaccccacttattcactttaaaagtgaatttctagccactagactacctgac 18303056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 36045167 - 36045120
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggc 69  Q
    ||||||||||| |||||||||||||||||||||||||| ||| |||||    
T  36045167 cggacaccccacttattcactttaaaagtgaatttctaaccaataggc 36045120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 38230238 - 38230184
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctga 76  Q
    |||||||| || |||||||||||||||||||||||||||||| || |||| ||||    
T  38230238 cggacacctcacttattcactttaaaagtgaatttctagccactatgctacctga 38230184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 4674848 - 4674811
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttcta 59  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4674848 cggacaccccacttattcactttaaaagtgaatttcta 4674811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 6447517 - 6447476
Alignment:
Q  18 acctcggacaccccaattattcactttaaaagtgaatttcta 59  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  6447517 acctcggacaccccacttattcactttaaaaatgaatttcta 6447476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 25346246 - 25346287
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  25346246 cggacaccccacgtattcactttaaaagtgaatttctagcca 25346287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7988906 - 7988959
Alignment:
Q  18 acctcggacaccccaattattcacttta-aaagtgaatttctagccattaggcta 71  Q
    |||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||    
T  7988906 acctcggacatcccacttattcactttataaagtgaattt-tagccattaggcta 7988959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 37303997 - 37304050
Alignment:
Q  23 ggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||||| ||||||||||||||| ||||||| |||||| ||||||| |||||    
T  37303997 ggacaccccacttattcactttaaaa-tgaatttatagccactaggctacctgac 37304050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 8690276 - 8690331
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  8690276 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 8690331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 9693024 - 9693079
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  9693024 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 9693079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 14149855 - 14149910
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  14149855 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 14149910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 28520764 - 28520709
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  28520764 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 28520709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 48968243 - 48968188
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  48968243 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 48968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 15640480 - 15640421
Alignment:
Q  18 acctcggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||    
T  15640480 acctcagacaccccacttattcactttaaaagtgaatttctagccactagactacctgac 15640421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 36954199 - 36954254
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||    
T  36954199 cggacaccccatttattcactttaaaagtgaatttctagctactaggctacctgac 36954254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 53815758 - 53815813
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||    
T  53815758 cggacaccccacttattcactataaaagtgaatttctagccactaggctacctgac 53815813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 46799469 - 46799510
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  46799469 cggacaccccatttattcactttaaaagtgaatttctagcca 46799510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 52031271 - 52031324
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||| |||||||||||||||||||||||||||||| || |||| |||||    
T  52031271 gacaccccacttattcactttaaaagtgaatttctagccactatgctacctgac 52031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 40150535 - 40150590
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||    
T  40150535 cggacacctcacttattcactttaaaagtgaatttctatccattagactacctgac 40150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 7768821 - 7768772
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  7768821 cggacaccccacttattcactttaaaaatgaaattctagtcattaggcta 7768772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 52330942 - 52330907
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttc 57  Q
    ||||||||||| ||||||||||||||||||||||||    
T  52330942 cggacaccccacttattcactttaaaagtgaatttc 52330907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 53354999 - 53354944
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| ||||| ||||||||| |||||||||| ||| ||||||| |||||    
T  53354999 cggacaccccacttatttactttaaaaatgaatttctaaccactaggctacctgac 53354944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 42411487 - 42411437
Alignment:
Q  22 cggacaccccaattattcactttaaaa-gtgaatttctagccattaggcta 71  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||| |||||||    
T  42411487 cggacaccccacttatttactttaaaaagtgaatttctagccactaggcta 42411437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 48501688 - 48501636
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||| |||||||||||||||||||||| ||| ||| ||| ||| |||||    
T  48501688 acaccccacttattcactttaaaagtgaattcctaaccagtagactacctgac 48501636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 27183714 - 27183659
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  27183714 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 27183659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 9625045 - 9625100
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||    
T  9625045 cggacaccccacttattcactttaaaagtgaatttctagccactagactacctgac 9625100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 36476424 - 36476476
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||| |||||||||||||||||||||| ||||||| ||||||| |||||    
T  36476424 acaccccacttattcactttaaaagtgaattcctagccactaggctacctgac 36476476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 10959195 - 10959250
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||| ||| |||||    
T  10959195 cggacaccccacttattcactttaaaagtgaatttctagtcactagactacctgac 10959250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 24559451 - 24559506
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||| ||| |||| || |||||    
T  24559451 cggacaccccacttattcactttaaaagtgaatttctaaccactaggttacctgac 24559506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 42824020 - 42823977
Alignment:
Q  20 ctcggacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  42824020 ctcggacaccctacttattcactttaaaagtgaatttctagcca 42823977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 52030183 - 52030238
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||| | ||||||||||||||||||||||| |||||| ||||||| |||||    
T  52030183 cggacaccctacttattcactttaaaagtgaatttttagccactaggctacctgac 52030238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 32453552 - 32453502
Alignment:
Q  26 caccccaattattcactttaaaagtgaatttctagccattaggctagctga 76  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||| ||||    
T  32453552 caccccacttattcactttaaaagtgaatttctagtcactaggctacctga 32453502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 24136785 - 24136734
Alignment:
Q  22 cggacaccccaattattcactttaaaa--gtgaatttctagccattaggcta 71  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| |||||||    
T  24136785 cggacaccccacttattcactttaaaaaggtgaatttctagccactaggcta 24136734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 14868750 - 14868793
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagccattagg 68  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||    
T  14868750 acaccccacttattcactttaaaagtgaaattctagccactagg 14868793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 7448391 - 7448341
Alignment:
Q  27 accccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||| |||||||||| ||||||||||||||||||| ||| ||| |||||    
T  7448391 accccacttattcacttcaaaagtgaatttctagccactagactacctgac 7448341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 7456533 - 7456483
Alignment:
Q  27 accccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||| |||||||||| ||||||||||||||||||| ||| ||| |||||    
T  7456533 accccacttattcacttcaaaagtgaatttctagccactagactacctgac 7456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 38555058 - 38555020
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  38555058 acacctcacttattcactttaaaagtgaatttctagcca 38555020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 44671538 - 44671586
Alignment:
Q  29 cccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||| ||||||||||||||||||||||||||  |||||| ||| |||||    
T  44671538 cccacttattcactttaaaagtgaatttctattcattagactacctgac 44671586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 50724425 - 50724484
Alignment:
Q  18 acctcggacaccccaattattca-ctttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||||||| ||||||| |||||    
T  50724425 acctcggacaccccacttattcaccttaaaaagtgaa-ttctagccactaggctacctgac 50724484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 50788423 - 50788364
Alignment:
Q  18 acctcggacaccccaattattca-ctttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||||||| ||||||| |||||    
T  50788423 acctcggacaccccacttattcaccttaaaaagtgaa-ttctagccactaggctacctgac 50788364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 43871015 - 43871070
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  43871015 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 43871070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 29035038 - 29035087
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  29035038 cggacaccccacttattcactttaaaagtgaatttctagccactaggcta 29035087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 34034412 - 34034467
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||    
T  34034412 cggacaccccacttattcactttaaaagtgaatttctagccactagactacctgac 34034467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 2304352 - 2304407
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| ||||| |||||||||||||||||||| ||| ||||||| |||||    
T  2304352 cggacaccccacttatttactttaaaagtgaatttctaaccactaggctacctgac 2304407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 36106884 - 36106923
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  36106884 gacactccatttattcactttaaaagtgaatttctagcca 36106923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 44187768 - 44187807
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  44187768 gacaccccacttattcactttaaaagtgaatttttagcca 44187807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 23405262 - 23405309
Alignment:
Q  23 ggacaccccaattattcactttaaaa--gtgaatttctagccattagg 68  Q
    |||||||||| |||||||| ||||||  ||||||||||||||||||||    
T  23405262 ggacaccccacttattcaccttaaaaaggtgaatttctagccattagg 23405309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 13870114 - 13870059
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  13870114 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 13870059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 40678885 - 40678940
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  40678885 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 40678940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 47763422 - 47763363
Alignment:
Q  18 acctcggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  47763422 acctcggacatcccacttattcactttaaaagtgaatttctagccactaggctacctgac 47763363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 17350123 - 17350172
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  17350123 cggacaccccacttattcactttaaaagtgaatttctagccactaggcta 17350172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 17954892 - 17954843
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  17954892 cggacaccccacttattcactttaaaagtgaatttctagccactaggcta 17954843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 35111714 - 35111766
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  35111714 acaccccacttattcactttaaaagtgaatttctagccactacgctagctgac 35111766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 39238778 - 39238833
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||    
T  39238778 cggacaccccacttattcactttaaaagtgaatttctagccgctaggctatctgac 39238833  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 19976585 - 19976536
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  19976585 cggacaccccacatattcactttaaaagtgaatttctagccactaggcta 19976536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 25819247 - 25819302
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||| ||| |||||    
T  25819247 cggataccccacttattcactttaaaagtgaatttctagccactagactacctgac 25819302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 52833139 - 52833085
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctga 76  Q
    |||||| |||| ||||||||||||||||||||||||||| || ||||||| ||||    
T  52833139 cggacatcccatttattcactttaaaagtgaatttctagacactaggctacctga 52833085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 29106901 - 29106860
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  29106901 cggacaccccatttattcacttgaaaagtgaatttctagcca 29106860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 29491532 - 29491580
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  29491532 cggacaccccacttattcacttt-aaagtgaatttctagccactaggcta 29491580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 2044982 - 2044942
Alignment:
Q  37 ttcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  2044982 ttcactttaaaagtgaatttctagccactaggctacctgac 2044942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 38021314 - 38021353
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagc 61  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  38021314 cggacaccccacttattcactttaaaagtgaatttttagc 38021353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 19516509 - 19516480
Alignment:
Q  34 ttattcactttaaaagtgaatttctagcca 63  Q
    ||||||||||||||||||||||||||||||    
T  19516509 ttattcactttaaaagtgaatttctagcca 19516480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 29936714 - 29936663
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatt--tctagccattaggcta 71  Q
    ||||||||||| |||||||  |||||||||||||  ||||||||||||||||    
T  29936714 cggacaccccacttattcatcttaaaagtgaatttctctagccattaggcta 29936663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 14981734 - 14981680
Alignment:
Q  23 ggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
T  14981734 ggacaccccacttattcactttaaaagtgaatttctagccactaggctacctgac 14981680  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 29284180 - 29284234
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctga 76  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  29284180 cggacaccccacttattcactttaaaagtgaatttctagccactaggctacctga 29284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 33628974 - 33628925
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  33628974 cggacaccccacttattcactttaaaagtgaatttctagccactaggcta 33628925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 9064930 - 9064983
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||    
T  9064930 gacaccccacttatttactttaaaagtgaatttctagccactaggctacctgac 9064983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 24470417 - 24470370
Alignment:
Q  29 cccaattattcactttaaaagtgaatttctagccattaggctagctga 76  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  24470417 cccacttattcactttaaaagtgaatttctagccaataggctacctga 24470370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 11636748 - 11636803
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    ||||||||||| || |||| |||||||||||||||||| ||| ||||||| |||||    
T  11636748 cggacaccccactttttcattttaaaagtgaatttctaaccactaggctacctgac 11636803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 6144026 - 6144067
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||    
T  6144026 cggacaccccacttattcactttaaaactgaatttctggcca 6144067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 6658576 - 6658527
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| |||||| | ||||||| ||||||||||||| |||||||    
T  6658576 cggacaccccacttattctccttaaaagagaatttctagccactaggcta 6658527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 4839 - 4790
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttctagccattaggcta 71  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  4839 cggacaccccacttattcactttaaaagtgaatttctagccactaggcta 4790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 12623 - 12674
Alignment:
Q  18 acctcggacaccccaattattcactttaaaagtgaatttctagccattaggc 69  Q
    |||||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  12623 acctcggataccccatttattcactttaaaagtgaatttctagcaattaggc 12674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 24397008 - 24397062
Alignment:
Q  23 ggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||||| |||||    
T  24397008 ggacaccctacttattcactttaaaagtgaatttctagccactaggctacctgac 24397062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 31475871 - 31475832
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagcca 63  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  31475871 gacaccccacttattcactttaaaagtgaatttctagcca 31475832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 41417306 - 41417263
Alignment:
Q  24 gacaccccaattattcactttaaaagtgaatttctagccattag 67  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||    
T  41417306 gacaccccacttattcactttaaaagtgaatttttagccattag 41417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 47635108 - 47635166
Alignment:
Q  18 acctcggacaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||||||| || ||||||||||||||| |||||||||||||| ||||||| |||||    
T  47635108 acctcggacacctcatttattcactttaaaa-tgaatttctagccactaggctacctgac 47635166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 14818395 - 14818357
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagcca 63  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  14818395 acaccccacttattcactttaaaagtgaatttctagcca 14818357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 15265393 - 15265355
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagcca 63  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  15265393 acaccccacttattcactttaaaagtgaatttctagcca 15265355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 19126799 - 19126836
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttcta 59  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19126799 cggacaccccacttattcactttaaaagtgaatttcta 19126836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 41139161 - 41139198
Alignment:
Q  34 ttattcactttaaaagtgaatttctagccattaggcta 71  Q
    |||||||||||||||||||||||||||||| |||||||    
T  41139161 ttattcactttaaaagtgaatttctagccactaggcta 41139198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 24304313 - 24304275
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagcca 63  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  24304313 acaccccatttattcactttaaaagtaaatttctagcca 24304275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28914910 - 28914874
Alignment:
Q  22 cggacaccccaattattcactttaaaagtgaatttct 58  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  28914910 cggacaccccacttattcactttaaaggtgaatttct 28914874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 21914 - 21965
Alignment:
Q  25 acaccccaattattcactttaaaagtgaatttctagccattaggctagctgac 77  Q
    |||||||| ||||||||||||||| |||||||||||||| ||| ||| |||||    
T  21914 acaccccacttattcactttaaaa-tgaatttctagccactagactacctgac 21965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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