View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_high_11 (Length: 311)
Name: NF3939_high_11
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 39238306 - 39238473
Alignment:
| Q |
4 |
catcacacttcttagaggaaaaacagcatctgcaaatgttttgtttcgaccaagaacagaaggacccaatactatccctccctgcattcacacaacataa |
103 |
Q |
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| T |
39238306 |
catcacacttcttagaggaaaaacagcatctgcaaatgttttgtttcgaccaagaacagaaggacccaatactatccctccctgcattcacacaacataa |
39238405 |
T |
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| Q |
104 |
catgtatatttaacaagataactttaccaaaatttatgaccttcaataaaatgattctaggagtatga |
171 |
Q |
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| T |
39238406 |
catgtatatttaacaagataactttaccaaaatttatgaccttcaataaaatgattctaggagtatga |
39238473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 39238474 - 39238587
Alignment:
| Q |
198 |
agacgtccctgtaaaacttttttacattaacaatgcataaaaaatattctaaaaaactaaccaagatttcggctataacgcgtggctgacaaatgggctt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39238474 |
agacgtccctgtaaaacttttttacattaacaatgcataaaaaatattctaaaaaactaaccaagatttcggctataacgcgtggctgacgaatgggctt |
39238573 |
T |
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| Q |
298 |
gagtatgaagacga |
311 |
Q |
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| T |
39238574 |
gagtatgaagacga |
39238587 |
T |
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