View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_high_14 (Length: 301)
Name: NF3939_high_14
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 39992757 - 39992482
Alignment:
| Q |
11 |
cacagacagaagaagatgaacagcagaaccagctttcattggtggctttgcttttggctgctataagaaaatcaatggtagcatgcagagtagatagacc |
110 |
Q |
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| T |
39992757 |
cacaaacagaagaagatgaacagcagaaccagctttcattggtggctttgcttttggctgctataagaaaatcaatggtagcatgcagagtagatagacc |
39992658 |
T |
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| Q |
111 |
agatcatgaagtcatctcaaccgttcatcaaatggagatcggatggccaactgatgttcagcatattactcatgttacctttgaccgtttcaatggcttt |
210 |
Q |
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| T |
39992657 |
agatcatgaagtcatctcaaccgttcatcaaatggagatcggatggccaactgatgttcagcatattactcatgttacctttgaccgtttcaatggcttt |
39992558 |
T |
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| Q |
211 |
cttggtcttcctgttgagtttgaagttgagatccctggtcgtgttcctagtgctaggtaaaacattcatcttttac |
286 |
Q |
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| T |
39992557 |
cttggtcttcctgttgagtttgaagttgagatccctggtcgtgttcctagtgctaggtaaaacattcatcttttac |
39992482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 269
Target Start/End: Original strand, 43875308 - 43875442
Alignment:
| Q |
135 |
tcatcaaatggagatcggatggccaactgatgttcagcatattactcatgttacctttgaccgtttcaatggctttcttggtcttcctgttgagtttgaa |
234 |
Q |
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| T |
43875308 |
tcatccaatggagattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgag |
43875407 |
T |
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| Q |
235 |
gttgagatccctggtcgtgttcctagtgctaggta |
269 |
Q |
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| T |
43875408 |
gttcatgttcctgctcctgttcctagtgctaggta |
43875442 |
T |
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