View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3939_high_2 (Length: 684)

Name: NF3939_high_2
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3939_high_2
NF3939_high_2
[»] chr4 (1 HSPs)
chr4 (16-673)||(53926775-53927430)


Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Original strand, 53926775 - 53927430
Alignment:
Q  16 caggaattctactgttgccttggtttaaggttttgtggagaaaacctcaagaatcctgtgagggtggttttgacagttgcaaccaatttcttttgatgtt 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53926775 caggaattctactgttgccttggtttaaggttt-gtggagaaaacctcaagaatcctgtgagggtggttttgacagttgcaaccaatttcttttgatgtt 53926873  T
Q  116 agagaaatcttattgagttgttgttcgtttggtggattgaataaatgagtgaatgattgtatatataaacattttgaattgattaaggtttgaagatttc 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53926874 agagaaatcttattgatttgttgttcgtttggtggattgaataaatgagtgaatgattgtatatataaacattttgaattgattaaggtttgaagatttc 53926973  T
Q  216 acgtcagagaattttgtcaaagagtgaaatttgggattttatttttattttaataaggctgtgtgtgaaggaaccttggccctgattccaatttcttgat 315  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53926974 acgtcagagaattttgtcaaagagtgaaatttgggatttttttttt-ttttaataaggctgtgtgtgaaggaaccttggccctgattccaatttcttgat 53927072  T
Q  316 tatagttaattgttgtgttgattaataattattgaggaacatgaaatttctaagcctggttgggaattcttttggatgttctgcatctggggagagacta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53927073 tatagttaattgttgtgttgattaataattattgaggaacatgaaatttctaagcctggttgggaattcttttggatgttctgcatctggggagagacta 53927172  T
Q  416 gtttctgcagcaagagatggtgatgttcaagaggctaaggccttgttggaatataatccacgtcttgcaaggtattcgacttttggagttcgtaattctc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53927173 gtttctgcagcaagagatggtgatgttcaagaggctaaggccttgttggaatataatccacgtcttgcaaggtattcgacttttggagttcgtaattctc 53927272  T
Q  516 ctttgcattactctgcagctcatggccaccatgaggtatataattacaattcaatgcacctcattttcttatatcttgtttttctcaattagtctttaac 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53927273 ctttgcattactctgcagctcatggccaccatgaggtatataattacaattcaatgcacctcattttcttatatcgtgtttttctcaattagtctttaac 53927372  T
Q  616 atatctattgtgttttgcattgtagatagtgtatctcttgcttgagtctggtgatgat 673  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53927373 atatctgttgtgttttgcattgtagatagtgtatctcttgcttgagtctggtgttgat 53927430  T

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