View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3939_high_25 (Length: 227)
Name: NF3939_high_25
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 6909588 - 6909405
Alignment:
| Q |
28 |
gtcgtgtttaaaatatttcttcacataaaaataatatgaatctttcaaacgtcaaaagctctaaagaaaagcaacaaaatttggacatagaaattaattt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6909588 |
gtcgtgtttaaaatatttcttcacataaaaataatatgaatcttccaaacatcaaaagctctaaagaaaagcaacaaaatttggacatagaaactaattt |
6909489 |
T |
|
| Q |
128 |
ttgaggtcagattttgtgcgggaactttttatagtgttctaaaaatgtctgcaaaattcattcaaaagataaagttgatctaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
6909488 |
ttgaggtcagattttgtgcgggaactttttatagtgttctaaaaatgtctgcaaaattcattcaaaagtttaagttgatctaac |
6909405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University