View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_high_8 (Length: 321)
Name: NF3939_high_8
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 16786790 - 16786501
Alignment:
| Q |
17 |
agtatgcgtgccaaatatcagtgttatataaacaattacaattgaattttttcccctatgtgaactaagtatacttgacacgcaactccaagactatttt |
116 |
Q |
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| T |
16786790 |
agtatgcgtgccaaatatcagtgttatataaacaattacaattgaattttttcccctatgtgaactaagtatacttgacaagcaactccaagactatttt |
16786691 |
T |
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| Q |
117 |
ttctagctgtataggatcgtaatgaatgagaaaaaactcagaaatttaacattatattgttatcgattgatattatacttgcacgtcttgtgagtactta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16786690 |
ttctagctgtataggatcgtaatgaatgagaaaaaactcagaaatttaac-----attgttatcgattgatattatacttgcacgtcctgtgagtactta |
16786596 |
T |
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| Q |
217 |
ctatacttctactactgatatatgcattaatacaagtaaaacctattgatatacacatattcatatttattctccattgtgattaacattctctg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16786595 |
ctatacttctactactgatatatgcattaatacaagtaaaacctactgatatacacatattcatatttattctacattgtgattaacattctctg |
16786501 |
T |
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