View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3939_low_1 (Length: 897)

Name: NF3939_low_1
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3939_low_1
NF3939_low_1
[»] chr7 (21 HSPs)
chr7 (19-888)||(4647063-4647914)
chr7 (308-428)||(4666917-4667039)
chr7 (314-445)||(4712075-4712208)
chr7 (308-445)||(4846009-4846148)
chr7 (310-444)||(4783831-4783967)
chr7 (310-444)||(4816260-4816396)
chr7 (310-444)||(4636820-4636956)
chr7 (308-364)||(4643714-4643772)
chr7 (755-889)||(17245446-17245580)
chr7 (308-364)||(4863965-4864023)
chr7 (509-567)||(4630780-4630838)
chr7 (328-451)||(4653476-4653601)
chr7 (535-575)||(4846225-4846265)
chr7 (308-363)||(4630971-4631028)
chr7 (533-575)||(4636708-4636750)
chr7 (533-569)||(4661649-4661685)
chr7 (533-569)||(4666786-4666822)
chr7 (509-569)||(4672527-4672587)
chr7 (308-364)||(4697184-4697242)
chr7 (308-363)||(4672720-4672777)
chr7 (524-565)||(4653375-4653416)
[»] scaffold0252 (1 HSPs)
scaffold0252 (669-885)||(4846-5062)
[»] chr2 (1 HSPs)
chr2 (669-887)||(25101607-25101825)
[»] chr3 (5 HSPs)
chr3 (701-885)||(8562975-8563159)
chr3 (701-887)||(6009013-6009199)
chr3 (738-887)||(17783823-17783976)
chr3 (738-887)||(19085342-19085495)
chr3 (738-887)||(19092450-19092603)
[»] chr4 (1 HSPs)
chr4 (308-445)||(18925736-18925875)
[»] chr8 (2 HSPs)
chr8 (699-887)||(15993397-15993585)
chr8 (701-887)||(14502697-14502883)
[»] chr5 (2 HSPs)
chr5 (701-887)||(22289352-22289538)
chr5 (699-884)||(28243619-28243804)
[»] chr6 (1 HSPs)
chr6 (738-867)||(26904527-26904656)


Alignment Details
Target: chr7 (Bit Score: 696; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 19 - 888
Target Start/End: Complemental strand, 4647914 - 4647063
Alignment:
Q  19 gattgagttaaccttaatcatattttaaaattcaaatttagccaagagaaaacgcagttgggtaggtgtggtggtattgccttggaatcttagagttgaa 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647914 gattgagttaaccttaatcatattttaaaattcaattttagccaagagaaaacgcagttgggtaggtgtggtggtattgccttggaatcttagagttgaa 4647815  T
Q  119 tgtgctactcttcaaactctcatgttcaattcccaattcttccaagtaaaaatttagttacactcaatataaactgagaaagtaaaggcaatgtgtcaaa 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647814 tgtgctactcttcaaactctcatgttcaaatcccaattcttccaagtaaaaatttagttacactcaatataaactgagaaagtaaaggcaatgtgtcaaa 4647715  T
Q  219 ttagtaatggtgaaatgagtagaaatgtattaagaattagttttcaaagttttctcttttttcactctatctatcctgtccatcaacttattttgaagtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647714 ttagtaatggtgaaatgagtagaaatgtattaagaattagttttcaaagttttctcttttttcactctatctatcctgtccatcaacttattttgaagtt 4647615  T
Q  319 gattctggttttacttatatggtaaggttacttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttatagatgatatt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4647614 gattctggttttacttatatggtaaggttacttttgtgagtttgattgacatataaagaattcaggtgatacagtttttcatatgtttatagatgatatt 4647515  T
Q  419 ttggttgaacaatatgctgatgtgattgcatgggctggtatgtgattgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactct 518  Q
    |||| |||||| |||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||    
T  4647514 ttggctgaacattatgctgatgtgattgcatgggc--------------------tggtgctccctgtcaataaggattgtgcttgttcatatgtactct 4647435  T
Q  519 ccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaatgattattccaaaattaatatcatgcgcggaggatatgtccgtctggag 618  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||    
T  4647434 caaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaacgattattccaaaattgatatcatgcgggaaggatatgtccgtctggag 4647335  T
Q  619 aaagactcattgccacaatttaaagcgcgatattgacaattgttgcaaagaaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatg 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  4647334 aaagactcattgccacaatttaaagcgcgatattgacaattgttgcaaagaaatgcaagacacgcggctgcaagctactggtgaggaccaaactcgcatg 4647235  T
Q  719 tttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcc--tattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaa 816  Q
    |||||||| ||||||| ||||||||||||| ||||| |||||||||||  ||||||| |||| |||||||||| |||| |||||||||||| ||||||||    
T  4647234 tttgagctaaggaaacgcttgcaacggctgatgtcctaagacgatgcctatattggcgtcaacgtgctaaagcacacttgtacaaggatggtgatagaaa 4647135  T
Q  817 tacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatgt 888  Q
    |||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  4647134 tacaaagttttttcatgcatcggcaacagctcggaaaaagttaaaccgtataacctctcttgatgatgatgt 4647063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 308 - 428
Target Start/End: Complemental strand, 4667039 - 4666917
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt 405  Q
    ||||| |||||||||||  ||||||||||||||||||||| |  ||||||||||||||||| ||||| |||||| ||||||||| ||||||||| || ||    
T  4667039 attttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggcatatcaagaatccaggtgatagagtttttcagatttt 4666940  T
Q  406 tatagatgatattttggttgaac 428  Q
    ||||||||||||| ||| |||||    
T  4666939 tatagatgatattatggctgaac 4666917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 314 - 445
Target Start/End: Original strand, 4712075 - 4712208
Alignment:
Q  314 aagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttataga 411  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||   | ||| ||||||  |||||||| ||||||||| || |||||  |    
T  4712075 aagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaa 4712174  T
Q  412 tgatattttggttgaacaatatgctgatgtgatt 445  Q
    ||||||||||| ||||||||| ||||||||||||    
T  4712175 tgatattttggctgaacaatacgctgatgtgatt 4712208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 308 - 445
Target Start/End: Original strand, 4846009 - 4846148
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt 405  Q
    |||| |||||||||||| ||||||||||||||||||||||||  |||||||||||||||   | ||  ||||||  |||||||| ||||||||| || ||    
T  4846009 atttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaagaataaaggtgatagagtttttcagatatt 4846108  T
Q  406 tatagatgatattttggttgaacaatatgctgatgtgatt 445  Q
    |||  |||||||||||| ||||| ||||||||||||||||    
T  4846109 tatcaatgatattttggctgaactatatgctgatgtgatt 4846148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 310 - 444
Target Start/End: Original strand, 4783831 - 4783967
Alignment:
Q  310 tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta 407  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||| ||  | |  ||||||| | ||||||| || || |    
T  4783831 tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca 4783930  T
Q  408 tagatgatattttggttgaacaatatgctgatgtgat 444  Q
    ||||||||| ||||| ||||||   ||||||||||||    
T  4783931 tagatgatagtttggctgaacatgctgctgatgtgat 4783967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 310 - 444
Target Start/End: Original strand, 4816260 - 4816396
Alignment:
Q  310 tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta 407  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||| ||  | |  ||||||| | ||||||| || || |    
T  4816260 tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca 4816359  T
Q  408 tagatgatattttggttgaacaatatgctgatgtgat 444  Q
    ||||||||| ||||| |||||  | ||||||||||||    
T  4816360 tagatgatagtttggctgaactttttgctgatgtgat 4816396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 310 - 444
Target Start/End: Complemental strand, 4636956 - 4636820
Alignment:
Q  310 tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta 407  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||  |||||||| ||| ||||| || || |    
T  4636956 tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaactataaaggtgatagagtctttcagatattca 4636857  T
Q  408 tagatgatattttggttgaacaatatgctgatgtgat 444  Q
    ||||| | | |||||||||| || | || ||||||||    
T  4636856 tagataacactttggttgaagaaaaggcggatgtgat 4636820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 4643772 - 4643714
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat 364  Q
    ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  4643772 attttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgat 4643714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 755 - 889
Target Start/End: Complemental strand, 17245580 - 17245446
Alignment:
Q  755 caagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaa 854  Q
    ||||| ||||| |||||||  ||| |||| ||  |||| ||||||||||||||||||||||| || || |||||||||||||| || | |||| | ||||    
T  17245580 caagatgatgcttattggcggcaacgtgcaaagactcattggtacaaggatggcgatagaaacaccaaattttttcatgcatctgctacagctcgtaaaa 17245481  T
Q  855 aggtaaaccgtataacctctcttgatgatgatgtc 889  Q
    ||||||| || || |  |||||||| |||||||||    
T  17245480 aggtaaatcgcattatttctcttgacgatgatgtc 17245446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 4864023 - 4863965
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat 364  Q
    |||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||    
T  4864023 attttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgat 4863965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 567
Target Start/End: Complemental strand, 4630838 - 4630780
Alignment:
Q  509 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttc 567  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||||||||||||||    
T  4630838 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagcttc 4630780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 451
Target Start/End: Complemental strand, 4653601 - 4653476
Alignment:
Q  328 tttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttatagatgatattttggttg 425  Q
    |||||||||||||| |||||||  |||||||| |||||||| | ||| ||| ||  |||||||| |||||| || || |||||| ||||| | |||| ||    
T  4653601 tttacttatatggtcaggttacatttttgtgaatttgattggcgtatcaaggataaaggtgatagagttttccagatatttatacatgatttcttggctg 4653502  T
Q  426 aacaatatgctgatgtgattgcatgg 451  Q
    ||| | |||||||||||||| |||||    
T  4653501 aaccaaatgctgatgtgatttcatgg 4653476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 575
Target Start/End: Original strand, 4846225 - 4846265
Alignment:
Q  535 aaattgaaagagttaatctttcaatcaagcttcaatgatta 575  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  4846225 aaattgaaagagttaatctttcaatcaagcttcaacgatta 4846265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 4631028 - 4630971
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga 363  Q
    |||||||||||||||||  |||||||||||||||||| ||||  ||||||||||||||    
T  4631028 attttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga 4630971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 575
Target Start/End: Complemental strand, 4636750 - 4636708
Alignment:
Q  533 tcaaattgaaagagttaatctttcaatcaagcttcaatgatta 575  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  4636750 tcaaattgaaagagtttatctttcaatcaagcttcaacgatta 4636708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 4661685 - 4661649
Alignment:
Q  533 tcaaattgaaagagttaatctttcaatcaagcttcaa 569  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4661685 tcaaattgaaagagttgatctttcaatcaagcttcaa 4661649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 4666822 - 4666786
Alignment:
Q  533 tcaaattgaaagagttaatctttcaatcaagcttcaa 569  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4666822 tcaaattgaaagagttaatctttcaattaagcttcaa 4666786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 509 - 569
Target Start/End: Complemental strand, 4672587 - 4672527
Alignment:
Q  509 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaa 569  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||| || |||||||||    
T  4672587 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaa 4672527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 4697184 - 4697242
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggtt--acttttgtgagtttgat 364  Q
    |||| |||||||||  ||||||||||||||||||||||||  | |||||||||||||||    
T  4697184 atttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgat 4697242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 4672777 - 4672720
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga 363  Q
    ||||||| |||||||||  ||| |||||||||||||||||||  ||||||||||||||    
T  4672777 attttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttga 4672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 565
Target Start/End: Complemental strand, 4653416 - 4653375
Alignment:
Q  524 aggaaggaatcaaattgaaagagttaatctttcaatcaagct 565  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  4653416 aggaagcactcaaattgaaagagttaatcttacaatcaagct 4653375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 105; Significance: 6e-52; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 669 - 885
Target Start/End: Original strand, 4846 - 5062
Alignment:
Q  669 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 768  Q
    ||||||||||||||||| |||| ||| || | ||||| |||| | | ||| |||| ||| ||||||   |||||||  || |||||||||||||||||||    
T  4846 aaatgcaagacacacggatgcatgcttctggggaggatcaaaatcgtatgcttgaacttcggaaacgtatgcaacgcttgttgtcccaagacgatgccta 4945  T
Q  769 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 868  Q
    ||||| |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  4946 ttggcgtcaacgtgctaaaactcactggtacaaggatggtgatagaaatacgaagttttttcatgcctcggcaacagcctggaaaaaggtaaatcgtata 5045  T
Q  869 acctctcttgatgatga 885  Q
    || ||||||||||||||    
T  5046 acatctcttgatgatga 5062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 669 - 887
Target Start/End: Original strand, 25101607 - 25101825
Alignment:
Q  669 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 768  Q
    |||||||||||| ||| ||| | ||| || | ||||||||||   ||||| |||| |||||||||  | ||||| |  |  |||||||||||||||||||    
T  25101607 aaatgcaagacaaacgactgtatgcttctggggaggaccaaaaccgcatgcttgaccttaggaaatgcatgcaaagcttaatgtcccaagacgatgccta 25101706  T
Q  769 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 868  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| |||  |||||||||||||| |||||    
T  25101707 ttggcgtcaacgtgctaaagctcactggtataaggatggcgacagaaatacaaagttttttcatgcctcgacaacagcccggaaaaaggtaaactgtata 25101806  T
Q  869 acctctcttgatgatgatg 887  Q
    ||||| ||| |||||||||    
T  25101807 acctcccttcatgatgatg 25101825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 701 - 885
Target Start/End: Original strand, 8562975 - 8563159
Alignment:
Q  701 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 800  Q
    ||||| |||||| ||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||| |||| |||||||| |||||| ||| |    
T  8562975 gaggatcaaactcgcatggttgagcttcggaaacgtatgcaacgattgctatcccaagacgatgcctattggcgtcaacgtgctaaaactcactagtata 8563074  T
Q  801 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatga 885  Q
    ||||||| || ||||||||||||||||||||||| ||||||| | || |||| |||||||| || |||| ||||||||| |||||    
T  8563075 aggatggtgacagaaatacaaagttttttcatgcctcggcaacaactcggaagaaggtaaatcgcataaactctcttgacgatga 8563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 701 - 887
Target Start/End: Complemental strand, 6009199 - 6009013
Alignment:
Q  701 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 800  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  6009199 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 6009100  T
Q  801 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 887  Q
    || |||| ||  | ||||| ||||||||||| || |||||||  ||| | || |||||||| |||||||| ||||||||||||||||    
T  6009099 agtatggtgaccgtaataccaagttttttcacgcttcggcaacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 6009013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 887
Target Start/End: Original strand, 17783823 - 17783976
Alignment:
Q  738 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 833  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  17783823 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 17783922  T
Q  834 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 887  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  17783923 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 17783976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 887
Target Start/End: Original strand, 19085342 - 19085495
Alignment:
Q  738 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 833  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19085342 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19085441  T
Q  834 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 887  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19085442 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19085495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 887
Target Start/End: Original strand, 19092450 - 19092603
Alignment:
Q  738 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 833  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19092450 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19092549  T
Q  834 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 887  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19092550 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19092603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 308 - 445
Target Start/End: Original strand, 18925736 - 18925875
Alignment:
Q  308 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt 405  Q
    ||||||||||||||||||  ||||||||| ||||||| || |  ||||| ||||||||||| ||||||||||||  |||||||| ||||||||| || ||    
T  18925736 attttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggcatataaagaatcaaggtgatagagtttttcagatttt 18925835  T
Q  406 tatagatgatattttggttgaacaatatgctgatgtgatt 445  Q
    ||||||||||| ||||| ||||| | ||||||||||||||    
T  18925836 tatagatgataatttggctgaacgaaatgctgatgtgatt 18925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 699 - 887
Target Start/End: Complemental strand, 15993585 - 15993397
Alignment:
Q  699 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 798  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || |||||    
T  15993585 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggta 15993486  T
Q  799 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 887  Q
     |||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  15993485 taaggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 15993397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 701 - 887
Target Start/End: Original strand, 14502697 - 14502883
Alignment:
Q  701 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 800  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  14502697 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 14502796  T
Q  801 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 887  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  14502797 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 14502883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 701 - 887
Target Start/End: Original strand, 22289352 - 22289538
Alignment:
Q  701 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 800  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  22289352 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 22289451  T
Q  801 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 887  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  22289452 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 22289538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 699 - 884
Target Start/End: Original strand, 28243619 - 28243804
Alignment:
Q  699 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 798  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||| ||||||||| | ||||| ||||||| ||||  ||| ||| |||| |||||    
T  28243619 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctactgtcccaatatgatgcttattggcttcaacatgcaaaaactcattggta 28243718  T
Q  799 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatg 884  Q
     ||||||||  |  | ||||| ||||||||||| || ||||| | |||||| || |||||||| | ||||||||||||||||||||    
T  28243719 taaggatggtaaccgtaataccaagttttttcacgcttcggctacagcttgaaagaaggtaaatcttataacctctcttgatgatg 28243804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 738 - 867
Target Start/End: Original strand, 26904527 - 26904656
Alignment:
Q  738 tgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatc 837  Q
    ||||||||||  |||||||||| |||||||||||||  ||| |||||||  |||| |||||||||||||| ||| |||||||||| || ||||||| |||    
T  26904527 tgcaacggcttttgtcccaagatgatgcctattggcgacaacgtgctaagactcattggtacaaggatggtgatcgaaatacaaaattctttcatgtatc 26904626  T
Q  838 ggcaatagcttggaaaaaggtaaaccgtat 867  Q
     ||   ||||||||| |||||||| |||||    
T  26904627 tgcttcagcttggaagaaggtaaatcgtat 26904656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University