View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_12 (Length: 305)
Name: NF3939_low_12
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 9349808 - 9349600
Alignment:
| Q |
80 |
tttgtacagtgatcaagctatacttatatctactatccagatcaatgagtcaccgaaa-accaaagatcacaataatcaccactacattatttctcaatg |
178 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9349808 |
tttgtacagtgaccaagctatacttatatctactatccagatcagtgagtcaccaaaacaccaaagatcacaataatcaccactacattatttctcaatg |
9349709 |
T |
|
| Q |
179 |
ttcttcgccatcttcgtgtcaatttcccactatagctatttttcttcaatttggtttatgtcctggaagttagtccaaatttgtttttttccgttactcc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9349708 |
ttcttcgccatcttcgtgtcaatttcccactatagctatttttcttcaatttggttcatgtcctgaaagttagtccaaatttgtttttttccgttactcc |
9349609 |
T |
|
| Q |
279 |
aaagttgtt |
287 |
Q |
| |
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||||||||| |
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| T |
9349608 |
aaagttgtt |
9349600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 3803529 - 3803457
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
83 |
Q |
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| T |
3803529 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
3803457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 3814197 - 3814126
Alignment:
| Q |
12 |
aaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3814197 |
aaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
3814126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 80 - 284
Target Start/End: Original strand, 56052150 - 56052355
Alignment:
| Q |
80 |
tttgtacagtgatcaagctatacttatatctactatccagatcaatgagtcaccgaaa-accaaagatcacaataatcaccactacattatttctcaatg |
178 |
Q |
| |
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|||| ||||||| ||| ||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
56052150 |
tttgcacagtgaccaaactatacttacatctactatccagatcagtgagtcatcgaaacaccaaagatcacaataataaccactacattatttctcaatg |
56052249 |
T |
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| Q |
179 |
ttcttcgccatcttcgtgtcaatttcccactatagctatttttcttcaatttgg-tttatgtcctggaagttagtccaaatttgtttttttccgttactc |
277 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||| || |||||| |||||||||||||||||| ||||||| |
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|
| T |
56052250 |
ttcttcgccatcttcatgtcaatttcccactatagcta-ttttcttcaatttggattcatgtcttgaaagttactccaaatttgtttttttcggttactc |
56052348 |
T |
|
| Q |
278 |
caaagtt |
284 |
Q |
| |
|
||||||| |
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|
| T |
56052349 |
caaagtt |
56052355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 2866295 - 2866227
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactctta |
79 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
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| T |
2866295 |
caaaggttcaagatctagatggcaagccatgtcaaggaattgggggcaaaattggcaaagtaactctta |
2866227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 27488146 - 27488077
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttat |
80 |
Q |
| |
|
|||||| ||||| ||| |||||||| | |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
27488146 |
caaagggtcaagaactggatggcaaccaatgtcaagaaattggggtcaaaattggcaaagcaactcttat |
27488077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 27476888 - 27476819
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttat |
80 |
Q |
| |
|
|||||| ||||| ||| | |||||| | |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
27476888 |
caaagggtcaagaactggttggcaaccaatgtcaagaaattggggccaaaattggcaaagcaactcttat |
27476819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 31999546 - 31999497
Alignment:
| Q |
24 |
actagatggcaagccatgtcaaggaattggggacaaaattggcagagcaa |
73 |
Q |
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||||| |||||| |||||||||| |||||||| ||||| ||||||||||| |
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| T |
31999546 |
actagctggcaacccatgtcaagaaattggggccaaaactggcagagcaa |
31999497 |
T |
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