View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_13 (Length: 302)
Name: NF3939_low_13
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 40949611 - 40949347
Alignment:
| Q |
27 |
ttttttaaatcagttaattgattaaccggtctaaaaagtcctgcatcatgtttgtaataattagtctccacatctatacaaacaagaggtacaactttta |
126 |
Q |
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| T |
40949611 |
tttttaaaatcagttaactgattaaccggtctaaaaagtcctgcatcatgtttgtaataatgagtctccacatctatacaaacaagaggtacaactttta |
40949512 |
T |
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| Q |
127 |
agatcgcttaatcatttaaccgggttaaagagtgaattgtttgttacc-nnnnnnnnngagtgaattgttcttaacaaccatttaatagtgatgcttgtc |
225 |
Q |
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| T |
40949511 |
agatcgcttaatcatttaaccgggttaaagagtgaattgtttgttaccaaaaaaaaaagagtgaattgttcttaacaatcattcaatagtgatgcttgtc |
40949412 |
T |
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| Q |
226 |
ctttatggggtgaattgtttctcgggatgccaaccttgttggggtgtcgatgtgtcctcttgatg |
290 |
Q |
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| T |
40949411 |
cttgttggggtgaattgtttctcggggtgccaaccttgttggggtgtcgatgtgttctcttgatg |
40949347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 34517702 - 34517750
Alignment:
| Q |
242 |
gtttctcgggatgccaaccttgttggggtgtcgatgtgtcctcttgatg |
290 |
Q |
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| T |
34517702 |
gtttctcgggatgccaaccttattgggatgtcgatgtttcttcttgatg |
34517750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 18517704 - 18517749
Alignment:
| Q |
245 |
tctcgggatgccaaccttgttggggtgtcgatgtgtcctcttgatg |
290 |
Q |
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| T |
18517704 |
tctcgggatgccaacctagttgggatgtcgatgttgcctcttgatg |
18517749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 2259452 - 2259404
Alignment:
| Q |
242 |
gtttctcgggatgccaaccttgttggggtgtcgatgtgtcctcttgatg |
290 |
Q |
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| T |
2259452 |
gtttcccgggatgccaacctagttgggatgtcggtgtttcctcttgatg |
2259404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 5781135 - 5781099
Alignment:
| Q |
242 |
gtttctcgggatgccaaccttgttggggtgtcgatgt |
278 |
Q |
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| T |
5781135 |
gtttctcgggatgccaacctagttgggatgtcgatgt |
5781099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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