View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_15 (Length: 290)
Name: NF3939_low_15
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 1104344 - 1104084
Alignment:
| Q |
20 |
acaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaagt |
119 |
Q |
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| T |
1104344 |
acaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaagt |
1104245 |
T |
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| Q |
120 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgacaattt |
219 |
Q |
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| T |
1104244 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttcgacaattt |
1104145 |
T |
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| Q |
220 |
gagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
280 |
Q |
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| T |
1104144 |
gagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
1104084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 1087692 - 1087540
Alignment:
| Q |
119 |
tgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttg---tttcgaca |
215 |
Q |
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| T |
1087692 |
tgtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaaca |
1087593 |
T |
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| Q |
216 |
atttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaagg |
268 |
Q |
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| T |
1087592 |
attgaagtaacaatctccacaggtgctccactaaatccaactccattccaagg |
1087540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 120 - 277
Target Start/End: Complemental strand, 1072030 - 1071870
Alignment:
| Q |
120 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||| ||||| |||| | | | | |
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| T |
1072030 |
gtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacac |
1071931 |
T |
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| Q |
218 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcct |
277 |
Q |
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| T |
1071930 |
ttgacgtaataatctccataggtgctccactaaatccaactccattccaaggaccactcct |
1071870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 280
Target Start/End: Complemental strand, 1047217 - 1047054
Alignment:
| Q |
120 |
gtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--at |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| | ||| | ||| | |
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| T |
1047217 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacag |
1047118 |
T |
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| Q |
218 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
280 |
Q |
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|||| |||||| || || || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047117 |
ttgatgtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatg |
1047054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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