View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_16 (Length: 251)
Name: NF3939_low_16
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 42439110 - 42438869
Alignment:
| Q |
1 |
cttatctttgaacatgatcataataacatattcccttaaaaaagcagtaatacatttttatcccgtttatnnnnnnnnnnggttgtactcgtgtcgctta |
100 |
Q |
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| T |
42439110 |
cttatctttgaacatgatcataataacatattcccttaaaaaagtagtaatacattttttacccgtttataaaaaaaaa--gttgtactcgtgtcgctta |
42439013 |
T |
|
| Q |
101 |
attttgctcatatattaagttagggtttatgtccgcgggtcatacgcatataagggatgttaatttacatcaatctaaaatcactaagtaaattagcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42439012 |
attttgctcatatattaagttagggtttatgtccacggatcatacgcatacaagggatgttaatttacatcaatctaaaatcactaagtaaactagcaac |
42438913 |
T |
|
| Q |
201 |
ctaaaaccacttgattttaactaaaaaaccactaacctttgtta |
244 |
Q |
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||| || |||||||||||||||||||||||||| |||||||||| |
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| T |
42438912 |
ctacaaacacttgattttaactaaaaaaccactgacctttgtta |
42438869 |
T |
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