View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_17 (Length: 247)
Name: NF3939_low_17
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 31426820 - 31427034
Alignment:
| Q |
16 |
cacagaagaattcaaagttgctttgcatgtgatgatttacaaggctgaaggaatcgacaaccccgcaaattacccaagtgttaacaacagagcttacaat |
115 |
Q |
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| T |
31426820 |
cacagaagaattcaaagttgctttgcatgtgatgatttacaaggctgaaggaatcgacaaccccgcaaattacccaagtgttaacaacagagcttacaat |
31426919 |
T |
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| Q |
116 |
gtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtaggtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31426920 |
gtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtaggtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatc |
31427019 |
T |
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| Q |
216 |
ttgatgatgaagttt |
230 |
Q |
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||||||||||||||| |
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| T |
31427020 |
ttgatgatgaagttt |
31427034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 7171781 - 7171995
Alignment:
| Q |
16 |
cacagaagaattcaaagttgctttgcatgtgatgatttacaaggctgaaggaatcgacaaccccgcaaattacccaagtgttaacaacagagcttacaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
7171781 |
cacagaagaattcaaagttgctttgcatgtgatgattttcaaggctgaaggaatcgacaaccccacaaattatccaagtgttaacaacagagcttacaat |
7171880 |
T |
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| Q |
116 |
gtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtaggtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatc |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
7171881 |
gtggtgtactggttaaagcctgatgaagaagcttccaccaagattgcggtaggtgttaaccctgaaaggaatcaagatgatatgatcgtgttagagaatc |
7171980 |
T |
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| Q |
216 |
ttgatgatgaagttt |
230 |
Q |
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||||||||||||||| |
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| T |
7171981 |
ttgatgatgaagttt |
7171995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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