View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_18 (Length: 246)
Name: NF3939_low_18
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 53185572 - 53185331
Alignment:
| Q |
1 |
cataaatcttaatcatgatgtggctgtacctaaacatctaagcggttgagaactcaattgataatagtcgtaagagaaacctttaactttattcttaatc |
100 |
Q |
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||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
53185572 |
cataaatcttaatcatgatgtggttgcacctaaacatctaaacagttgagaactcaattgataatagtcgtaagagaaacccttaactttgttcttaatc |
53185473 |
T |
|
| Q |
101 |
taagaccnnnnnnnnnnnnnnnnnttaccatatcaaaaatagagacattagagcaatcatgtaggtgaaaaatattatgattccgctgcttccatattga |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
53185472 |
aaagaccaaaaggaaaaaaaaa--ttaccatatcaaaaatagagacattagagcaatcatgtaggtcaaaaatattatgattacgctgcttccatattga |
53185375 |
T |
|
| Q |
201 |
ccataaacatgcctaccatgttactt-aaagatatccctatgct |
243 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53185374 |
ccataaacatgcctaccatgttacttaaaagatatccctatgct |
53185331 |
T |
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