View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_20 (Length: 244)
Name: NF3939_low_20
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 4648167 - 4648020
Alignment:
| Q |
16 |
aaatttattcctgctaatatatatttctctttgatttactatttaatgataattctatatttccaacacttctattttggttcggggtagatggagggga |
115 |
Q |
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| T |
4648167 |
aaatttattcctgctaatat----ttctctttgatttactatttaatgataattctatatttccaacacttctattttggttcggggtagatggagggga |
4648072 |
T |
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| Q |
116 |
gaggagaggaggaaatgttgttaatcatatgtattggttcaattttgaagag |
167 |
Q |
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| T |
4648071 |
gaggagaggaggaaatgttgttaatcatatgtgttggttcaattttgaagag |
4648020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 4647799 - 4647884
Alignment:
| Q |
159 |
tttgaagagtagcacattcaacgttaagattcgaaggcaatacctccacaccttcccaacttctttttctcttggctaaatttgaa |
244 |
Q |
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| T |
4647799 |
tttgaagagtagcacattcaactctaagattccaaggcaataccaccacacctacccaactgcgttttctcttggctaaaattgaa |
4647884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 36795091 - 36795124
Alignment:
| Q |
36 |
atatttctctttgatttactatttaatgataatt |
69 |
Q |
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| T |
36795091 |
atatttctctttgatttactacttaatgataatt |
36795124 |
T |
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