View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_23 (Length: 235)
Name: NF3939_low_23
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 16428587 - 16428697
Alignment:
| Q |
48 |
tagggaatcaatcagagaagatgggtgggtgaggggtttgacagttaaatcgatgggtttgggggaaacaagtcatgaaccaaccaaccaaccataaaag |
147 |
Q |
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| T |
16428587 |
tagggaatcaatcagagaagatgggtt--tgaggggtttgacggttgaatcgatgggtttgggggaaaccagtcatg----aaccaaccaaccataaaag |
16428680 |
T |
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| Q |
148 |
caatcgatgagaaagat |
164 |
Q |
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| T |
16428681 |
caatcgatgagaaagat |
16428697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16428519 - 16428568
Alignment:
| Q |
1 |
aataacaacgacgatggcttgacggcggtggccagagacactgagattag |
50 |
Q |
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| T |
16428519 |
aataacaacgacgatggcttgacggcggtggccagagacattgagattag |
16428568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 15828751 - 15828861
Alignment:
| Q |
48 |
tagggaatcaatcagagaagatgggtgggtgaggggtttgacagttaaatcgatgggtttgggggaaacaagtcatgaaccaaccaaccaaccataaaag |
147 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
15828751 |
tagggaatcaatcagagaagatgggtt--tgaggggtttgacggttgaatcgatgggtttgggggaaaccagtcatg----aaccaaccaaccataaaag |
15828844 |
T |
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| Q |
148 |
caatcgatgagaaagat |
164 |
Q |
| |
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||||||||||||||||| |
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| T |
15828845 |
caatcgatgagaaagat |
15828861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 10314407 - 10314517
Alignment:
| Q |
48 |
tagggaatcaatcagagaagatgggtgggtgaggggtttgacagttaaatcgatgggtttgggggaaacaagtcatgaaccaaccaaccaaccataaaag |
147 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||| |||||||| |
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| T |
10314407 |
tagggaatcaatcagagaagatgggtt--tgaggggtttgacggttgaatcgatgggtttgggggaaaccagtcatg----aaccaaccaagcataaaag |
10314500 |
T |
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| Q |
148 |
caatcgatgagaaagat |
164 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
10314501 |
caatcgatgagaaagat |
10314517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10314339 - 10314388
Alignment:
| Q |
1 |
aataacaacgacgatggcttgacggcggtggccagagacactgagattag |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10314339 |
aataacaacgacgatggcttgacggcggtggccagagacactgagattag |
10314388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15828683 - 15828732
Alignment:
| Q |
1 |
aataacaacgacgatggcttgacggcggtggccagagacactgagattag |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
15828683 |
aataacaacgacgatggcttgacggcggtggccagagacattgagattag |
15828732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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