View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3939_low_27 (Length: 211)
Name: NF3939_low_27
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 39992000 - 39992181
Alignment:
| Q |
17 |
tgaagaaccttaaccctattcatatgctaccaaagcatacaattcatgtccaccaaaccccaaaaaatatcaagttttgccctttagtaaatattatcta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39992000 |
tgaagaaccttaaccctattcatatgctaccaaagcatacaattcatgtccaccaaaccccaaaaaatatcaagttttgccctttagtaaatattatcta |
39992099 |
T |
|
| Q |
117 |
ggacaatagtttacaagatcacaacaccagttcaaaggaatttcatttcataaggtacaaatccatagttctagcatattct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39992100 |
ggacaatagtttacaagatcacaacaccagttcaaaggaatttcatttcataaggtacaaatccatagttctagcattttct |
39992181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University