View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3939_low_4 (Length: 496)

Name: NF3939_low_4
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3939_low_4
NF3939_low_4
[»] chr7 (45 HSPs)
chr7 (212-483)||(8602332-8602603)
chr7 (241-483)||(7877301-7877543)
chr7 (247-483)||(8590996-8591232)
chr7 (9-166)||(8591343-8591500)
chr7 (207-481)||(8382409-8382684)
chr7 (10-148)||(8602697-8602835)
chr7 (13-142)||(8647670-8647799)
chr7 (16-142)||(7876841-7876967)
chr7 (22-142)||(8582632-8582752)
chr7 (8-142)||(8610633-8610767)
chr7 (13-142)||(13332154-13332283)
chr7 (247-454)||(29581415-29581622)
chr7 (13-107)||(3148375-3148469)
chr7 (16-142)||(8577258-8577384)
chr7 (13-142)||(8668434-8668563)
chr7 (19-147)||(8546639-8546767)
chr7 (22-142)||(8572559-8572679)
chr7 (13-89)||(8655371-8655447)
chr7 (16-107)||(10493008-10493099)
chr7 (13-142)||(8538773-8538902)
chr7 (13-93)||(17261410-17261490)
chr7 (8-144)||(29576988-29577124)
chr7 (31-113)||(8660242-8660324)
chr7 (13-98)||(6790423-6790508)
chr7 (13-142)||(8635503-8635632)
chr7 (13-113)||(17269098-17269198)
chr7 (49-152)||(8568797-8568900)
chr7 (247-325)||(8546148-8546226)
chr7 (13-142)||(27829349-27829478)
chr7 (247-286)||(8582255-8582294)
chr7 (31-113)||(1302309-1302391)
chr7 (244-286)||(8576881-8576923)
chr7 (8-142)||(29581164-29581298)
chr7 (13-114)||(8584540-8584641)
chr7 (13-142)||(8630197-8630326)
chr7 (247-456)||(29577243-29577452)
chr7 (247-295)||(8567233-8567281)
chr7 (247-286)||(8559888-8559927)
chr7 (68-134)||(8382289-8382355)
chr7 (247-325)||(8538552-8538630)
chr7 (247-289)||(8610469-8610511)
chr7 (25-109)||(8104067-8104151)
chr7 (390-481)||(3147632-3147723)
chr7 (247-286)||(8570866-8570905)
chr7 (25-109)||(8016309-8016393)
[»] chr4 (5 HSPs)
chr4 (13-142)||(9323068-9323197)
chr4 (13-142)||(9377547-9377676)
chr4 (13-142)||(9335040-9335168)
chr4 (388-454)||(30775639-30775705)
chr4 (19-114)||(35133451-35133546)
[»] chr5 (3 HSPs)
chr5 (13-107)||(28220951-28221045)
chr5 (13-98)||(42554191-42554276)
chr5 (390-443)||(28220349-28220402)
[»] chr2 (8 HSPs)
chr2 (8-114)||(12257913-12258019)
chr2 (8-142)||(16656599-16656733)
chr2 (19-142)||(12244413-12244536)
chr2 (12-98)||(43626333-43626419)
chr2 (13-122)||(12235787-12235896)
chr2 (19-142)||(14705432-14705555)
chr2 (19-142)||(7543246-7543369)
chr2 (13-84)||(16661070-16661141)
[»] chr8 (4 HSPs)
chr8 (19-142)||(12529837-12529960)
chr8 (13-92)||(43745843-43745919)
chr8 (390-483)||(43745205-43745298)
chr8 (247-283)||(12529062-12529098)
[»] chr1 (3 HSPs)
chr1 (13-107)||(4677544-4677638)
chr1 (13-98)||(15596072-15596157)
chr1 (12-107)||(34465251-34465346)
[»] chr6 (1 HSPs)
chr6 (70-113)||(28911312-28911355)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 212 - 483
Target Start/End: Complemental strand, 8602603 - 8602332
Alignment:
Q  212 aaaaaatttatatatcacaaacacttatattgttacagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttg 311  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  8602603 aaaaaatttatatatcaccaacacttctattgttacagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttg 8602504  T
Q  312 tggccatttaaggttgttcctggcaatgatgacaaacctgaaatcattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  8602503 tggccatttaaggttgttcctggcaatgatgacaaacctgagatcattgttaagtataagggtggggaaaagcacttctgtgctgaggaaatctcatcaa 8602404  T
Q  412 tagtcctaacaaagatgcgtgagattgcagagaagtttttggagtcatctgtggagaatgcagttgttactg 483  Q
    | ||||| |||||||||||||| ||||||||||||||| |||||||| ||||  ||||||||||||||||||    
T  8602403 tggtccttacaaagatgcgtgaaattgcagagaagtttctggagtcacctgtcaagaatgcagttgttactg 8602332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 241 - 483
Target Start/End: Original strand, 7877301 - 7877543
Alignment:
Q  241 ttgttacagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatga 340  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| || | |||||||||||||||||||||| ||||   |||    
T  7877301 ttgttgcagatgcaaagaggttgattggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggttgttgctggttctga 7877400  T
Q  341 tgacaaacctgaaatcattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgca 440  Q
    |||||| ||||| |||||||||| ||||||||| | |||||||| ||| ||||| |||||||| ||||| ||  |||| ||||||||||| |||||||||    
T  7877401 tgacaagcctgatatcattgttaagtataagggcgaggaaaagcacttttgtgccgaggaaatatcatccatgatccttacaaagatgcgcgagattgca 7877500  T
Q  441 gagaagtttttggagtcatctgtggagaatgcagttgttactg 483  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  7877501 gagaagtttttggagtcacctgtcaagaatgcagttgttactg 7877543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 247 - 483
Target Start/End: Complemental strand, 8591232 - 8590996
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaa 346  Q
    |||||||||||||||| |||||||||||||  ||||||||||| ||||||| ||||||  | ||||||||||||||||||||| | ||   |||||||||    
T  8591232 cagatgcaaagaggttgattggaaggaaattcagtgattctgtaattcagaatgacatggaattgtggccatttaaggttgtttccggttttgatgacaa 8591133  T
Q  347 acctgaaatcattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgcagagaag 446  Q
     |||||||||||||||| ||| ||||||| |||||||||  | ||||| |||||||||||||| || || || ||||||||||| |||||||| || |||    
T  8591132 gcctgaaatcattgttaagtacaagggtgaggaaaagcgtctttgtgcggaggaaatctcatccatggttctcacaaagatgcgagagattgctgaaaag 8591033  T
Q  447 tttttggagtcatctgtggagaatgcagttgttactg 483  Q
    |||||||||||| ||||  ||||||||||||||||||    
T  8591032 tttttggagtcacctgtcaagaatgcagttgttactg 8590996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 8591500 - 8591343
Alignment:
Q  9 agcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcag 108  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||    
T  8591500 agcagagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattggtgatgctgcaaaaaaccag 8591401  T
Q  109 gctgcttctaacccaacaaacactatctttggtagtttatttttctatcttcctgcat 166  Q
    ||||||||||||||| |||||||| |||| |||| ||||| ||| |||||||||||||    
T  8591400 gctgcttctaacccagcaaacactgtcttcggtaatttatctttttatcttcctgcat 8591343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 207 - 481
Target Start/End: Original strand, 8382409 - 8382684
Alignment:
Q  207 agaacaaaa-aatttatatatcacaaacacttatattgttacagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacata 305  Q
    ||||||||| ||||||| |||||  || |||| ||||| ||||||||||||||| || |||||||||||||||||||||||| | ||||||| |||||||    
T  8382409 agaacaaaacaatttatttatcagtaaaacttttattgctacagatgcaaagagattgattggaaggaaatatagtgattctattattcagaatgacata 8382508  T
Q  306 cagttgtggccatttaaggttgttcctggcaatgatgacaaacctgaaatcattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatct 405  Q
    || || ||||||||||| ||  || ||||   ||||||||| ||||| || ||||||| ||||||||||| |||||| | | | ||||| ||||||||||    
T  8382509 caattatggccatttaaagtacttgctggttctgatgacaagcctgagataattgttaagtataagggtgaggaaaaacacctttgtgccgaggaaatct 8382608  T
Q  406 catcaatagtcctaacaaagatgcgtgagattgcagagaagtttttggagtcatctgtggagaatgcagttgttac 481  Q
    | || || ||||| | |||||||||||||||||||||||| |||||||||||| || | ||||||| |||||||||    
T  8382609 cctctatggtcctcaaaaagatgcgtgagattgcagagaattttttggagtcacctatcgagaatgtagttgttac 8382684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 8602835 - 8602697
Alignment:
Q  10 gcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcagg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  8602835 gcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatcagg 8602736  T
Q  110 ctgcttctaacccaacaaacactatctttggtagtttat 148  Q
    ||||||||||||||   |||||||||||||||| |||||    
T  8602735 ctgcttctaacccagtcaacactatctttggtaatttat 8602697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 8647799 - 8647670
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| | || |||||||||||||    
T  8647799 gagattattcacaatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcaggctg 8647700  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    |||||||||| || |||||| |||||||||    
T  8647699 cttctaaccctaccaacactgtctttggta 8647670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 7876841 - 7876967
Alignment:
Q  16 attattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgctt 115  Q
    |||||||||||||| ||||| |||||||| || ||||||||||||||||| ||  ||||||||||||||||||||||| |||| |||||||||||||| |    
T  7876841 attattcacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgccaaaaatcaggctgcct 7876940  T
Q  116 ctaacccaacaaacactatctttggta 142  Q
    |||||||| | |||||| |||||||||    
T  7876941 ctaacccatccaacactgtctttggta 7876967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 8582752 - 8582632
Alignment:
Q  22 cacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacc 121  Q
    ||||||||||||||||||| ||| || ||||||| ||||||||||||| ||  |||||| |||||||||||| |||| |||||||| |||||||||||||    
T  8582752 cacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaacc 8582653  T
Q  122 caacaaacactatctttggta 142  Q
    |||| |||||||||| |||||    
T  8582652 caaccaacactatctatggta 8582632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 8610767 - 8610633
Alignment:
Q  8 gagcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    |||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||| |||||| |||| ||||||||    
T  8610767 gagctgagataatccataatgagcaaggaaacagaaccactccttcttttgttgctttctctggtgatcaaaggttgataggtgatgctgctaaaaatca 8610668  T
Q  108 ggctgcttctaacccaacaaacactatctttggta 142  Q
     |||||||| |||||| | |||||  |||||||||    
T  8610667 agctgcttcaaacccagctaacacagtctttggta 8610633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 13332154 - 13332283
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |   |||||||||| |||||||||||| |||| || |||||  |||    
T  13332154 gagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgccaagaatcaatctg 13332253  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    |  |||||||   |||||||||||||||||    
T  13332254 ccactaaccctgaaaacactatctttggta 13332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 454
Target Start/End: Original strand, 29581415 - 29581622
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaa 346  Q
    ||||||||||||||||||| ||||| ||||||||||||||| | ||||||  ||| ||| | |||||||| |||||||| ||| |||||| |||||||||    
T  29581415 cagatgcaaagaggttaatcggaagaaaatatagtgattctattattcaggatgatataaatttgtggccctttaaggtagttgctggcactgatgacaa 29581514  T
Q  347 acctgaaatcattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgcagagaag 446  Q
     ||    ||| |||||| ||| |||||||  || ||| | ||   |||||||||||| ||||| ||  ||||  ||||||||| ||| |||||||||||     
T  29581515 tcccatgatccttgttaagtacaagggtgaagagaagaggtttgttgctgaggaaatatcatctatgatcctctcaaagatgcatgatattgcagagaaa 29581614  T
Q  447 tttttgga 454  Q
    ||||||||    
T  29581615 tttttgga 29581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 3148469 - 3148375
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    ||||||||||||||||| ||||| |||| ||| || ||||||||||||||||| |||||||||||||||||| |||||||| |||| || |||||    
T  3148469 gagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaagaatca 3148375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 8577384 - 8577258
Alignment:
Q  16 attattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgctt 115  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||  ||  |||||| |||||||| ||| |||| |||||||| ||||||     
T  8577384 attatacacaatgatcaaggaaacagaaccactccttcttgtgttgcttttaccaattctcaaagattgattggcgatgctgccaaaaatcaagctgcta 8577285  T
Q  116 ctaacccaacaaacactatctttggta 142  Q
    |||| ||| | || ||||| |||||||    
T  8577284 ctaatccatccaatactatttttggta 8577258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 8668563 - 8668434
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||||||||||||||||||||||||| |||  || ||||||||||||||||| |   |||| |||||||||||||| ||| |||| || |||||  |||    
T  8668563 gagattattcacaatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgctaagaatcaatctg 8668464  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    || |||||||   |||||||||||||||||    
T  8668463 ctactaaccctgaaaacactatctttggta 8668434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 8546767 - 8546639
Alignment:
Q  19 attcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttcta 118  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||||| ||  ||   |||||| ||||||||||| |||| |||||||||||| ||||||    
T  8546767 attcacaatgatcaaggaaacaaaacaacaccttcttgtgttgctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcaggcttcttcta 8546668  T
Q  119 acccaacaaacactatctttggtagttta 147  Q
    ||||||  |||||| | ||||||| ||||    
T  8546667 acccaatcaacactgtatttggtaattta 8546639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 8572679 - 8572559
Alignment:
Q  22 cacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacc 121  Q
    |||||||| |||||||||||||| ||||| |||| ||||||||||||| ||  |||||| ||||| |||||| |||| |||||||| |||||| |||| |    
T  8572679 cacaatgaccaaggaaacagaacaactccctcttgtgttgcttttactaattctcaaagattgatcggtgatgctgccaaaaatcaagctgctactaatc 8572580  T
Q  122 caacaaacactatctttggta 142  Q
    || | || |||||||||||||    
T  8572579 catccaatactatctttggta 8572559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 8655447 - 8655371
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattgg 89  Q
    ||||||||||||||||||||||| || |||||||| |||||| |||||||||| |||||| ||||||||||||||||    
T  8655447 gagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 8655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 10493008 - 10493099
Alignment:
Q  16 attattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||| |   |||||||||||||||| |||||| |||| || |||||    
T  10493008 attattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaagaatca 10493099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 8538902 - 8538773
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||| || ||||| ||||||||||||| ||| || ||||||| ||||| ||||| | ||  |||| | |||||||||||| |||| |||||||| |||     
T  8538902 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttggttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 8538803  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    | |||||||||||||||||| |||||||||    
T  8538802 cctctaacccaacaaacactgtctttggta 8538773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 17261490 - 17261410
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgat 93  Q
    ||||| |||||||||||||||||||||| || |||||||||||||||||||||| || | ||| |||||||||| ||||||    
T  17261490 gagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgat 17261410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 29576988 - 29577124
Alignment:
Q  8 gagcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    |||| ||||| || |||||||||||||| || ||||| || |||||| |||| ||||| ||||||   | |||||| |||||| || |||| ||||||||    
T  29576988 gagctgagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatgctgctaaaaatca 29577087  T
Q  108 ggctgcttctaacccaacaaacactatctttggtagt 144  Q
    |||||| || |||||||| ||||||||||| ||||||    
T  29577088 ggctgcctcaaacccaaccaacactatcttcggtagt 29577124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 8660324 - 8660242
Alignment:
Q  31 caaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgc 113  Q
    |||||||||| ||| || ||||| ||||||||||| ||||| ||||||||||||||||||||| |||| || |||||||||||    
T  8660324 caaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaagaatcaggctgc 8660242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 6790508 - 6790423
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgc 98  Q
    ||||||||||||||||| ||||| |||| ||| || ||||||||||||||||| || ||||| ||||||||||| |||||| ||||    
T  6790508 gagattattcacaatgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgctgc 6790423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 8635503 - 8635632
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||| || |||||||| ||||| |||||||  || ||||||| ||||||||| ||||| |  |||||||||||||||||| |||| ||||| ||||||     
T  8635503 gagatcatccacaatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgccaaaaaccaggctt 8635602  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    | ||||||||| | || ||| |||||||||    
T  8635603 cctctaacccatccaatactgtctttggta 8635632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 17269198 - 17269098
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    |||||||| |||||||||||||| |||| ||||||||| ||||||||||||||| || | ||| ||||||| || |||||||| || || ||||| ||||    
T  17269198 gagattatacacaatgatcaaggcaacaaaactactccgtcttttgttgcttttgctaaagatgaaaggtttatcggtgattccgctaagaatcaagctg 17269099  T
Q  113 c 113  Q
    |    
T  17269098 c 17269098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 8568900 - 8568797
Alignment:
Q  49 ccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggtagtttat 148  Q
    ||||||| ||||||||| ||| |   |||||| |||||||||||| |||| |||||||| ||||||||||| ||||| ||||||| |||||||| || ||    
T  8568900 ccttcttgtgttgctttcactaaatctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaatccaaccaacactacctttggtaattcat 8568801  T
Q  149 tttt 152  Q
    ||||    
T  8568800 tttt 8568797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 8546226 - 8546148
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggt 325  Q
    ||||||||||||||||||||||||||||||||||||||||  |  |||||| |||  ||| ||||||||| ||||||||    
T  8546226 cagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggt 8546148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 27829349 - 27829478
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||||||||||||||| ||||| ||||  || || ||||||| ||||||||| || ||  | || ||||||||||||||| |||| || || || ||||    
T  27829349 gagattattcacaatgaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgctgctaagaaccaagctg 27829448  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    |||| |||||   |||||||||||||||||    
T  27829449 cttccaaccctcaaaacactatctttggta 27829478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 8582294 - 8582255
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattc 286  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8582294 cagatgcaaagaggttaattggaaggaaatatagtgattc 8582255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 1302391 - 1302309
Alignment:
Q  31 caaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgc 113  Q
    ||||| |||| ||| || || |||||||||||||| || ||||||||||||||||| |||||| |||| || |||||||||||    
T  1302391 caaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaagaatcaggctgc 1302309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 8576923 - 8576881
Alignment:
Q  244 ttacagatgcaaagaggttaattggaaggaaatatagtgattc 286  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  8576923 ttacagatacaaagaggttaattggaaggaaatatagtgattc 8576881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 29581164 - 29581298
Alignment:
Q  8 gagcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    |||| ||||| || |||||||||||||| ||  |||| || |||||| |||| ||||| |||||    |  ||||||||| || || |||| ||||||||    
T  29581164 gagctgagatcatccacaatgatcaaggcaatggaaccacaccttctgttgtagctttcactgactcactgaggttgattagtaatgctgctaaaaatca 29581263  T
Q  108 ggctgcttctaacccaacaaacactatctttggta 142  Q
    ||||||  | |||||||||||||||||||||||||    
T  29581264 ggctgccgcaaacccaacaaacactatctttggta 29581298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 8584540 - 8584641
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    |||||||||||||| ||| |||| || | ||  || ||||| |||||||||||||| ||||||||||||||| |||||| | |||| ||  |||||||||    
T  8584540 gagattattcacaacgatgaaggcaataaaatcacaccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatcaggctg 8584639  T
Q  113 ct 114  Q
    ||    
T  8584640 ct 8584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 8630326 - 8630197
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    |||||||||||||||||| |||| || | ||  || ||||| || ||||||||||| ||||||||||||||| |||||| | |||| ||  |||||||||    
T  8630326 gagattattcacaatgatgaaggcaataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatcaggctg 8630227  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    |    ||||||  ||||||| |||||||||    
T  8630226 ccatcaacccacaaaacactgtctttggta 8630197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 456
Target Start/End: Original strand, 29577243 - 29577452
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaa 346  Q
    ||||||| ||||||||||||||||||||||  ||||||||  | |||| ||  || ||| |||||||||| ||||||||  |||||||   |||||||||    
T  29577243 cagatgcgaagaggttaattggaaggaaattcagtgattccattattcggaaagatataaagttgtggccctttaaggtcattcctggagctgatgacaa 29577342  T
Q  347 acctgaaatcattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgcagagaag 446  Q
     ||  | ||| |||||| ||| |||||    || ||| ||||   |||||||||||| || || ||  ||||  |||||||||  ||||||||||||||     
T  29577343 tcccaagatccttgttaagtacaagggcaaagagaagtgctttgttgctgaggaaatatcgtctatgatcctctcaaagatgcaggagattgcagagaaa 29577442  T
Q  447 tttttggagt 456  Q
    ||||||||||    
T  29577443 tttttggagt 29577452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 8567281 - 8567233
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattca 295  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||    
T  8567281 cagatgcaaagaggttaactggaagaaaatatagtgattatgtcattca 8567233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 8559927 - 8559888
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattc 286  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  8559927 cagatgcaaagaggttaattggaaggaaatacagtgattc 8559888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 8382289 - 8382355
Alignment:
Q  68 ctgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactat 134  Q
    ||||| ||||||||||| |||||||| |||| || |||||| |||| ||||||||||| ||||||||    
T  8382289 ctgatcatcaaaggttggttggtgatgctgctaagaatcagactgcctctaacccaaccaacactat 8382355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 8538630 - 8538552
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggt 325  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||| ||||||| |||  ||| ||||||||| || |||||    
T  8538630 cagatgctaagaggttggttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggt 8538552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 8610511 - 8610469
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattctgt 289  Q
    |||||||||||||||| ||||||||||||||||| ||||||||    
T  8610511 cagatgcaaagaggttgattggaaggaaatatagcgattctgt 8610469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 8104151 - 8104067
Alignment:
Q  25 aatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcagg 109  Q
    ||||||||||| |||||||| || || |||| ||||||||| ||||||  | |||||||||| |||||| |||| || |||||||    
T  8104151 aatgatcaagggaacagaacgacaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 8104067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 481
Target Start/End: Complemental strand, 3147723 - 3147632
Alignment:
Q  390 tgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgcagagaagtttttggagtcatctgtggagaatgcagttgttac 481  Q
    |||||||| ||||||||||| || || ||||||||||||||  ||| ||||||| ||||||| || |   ||||  ||||||||||||||||    
T  3147723 tgtgctgaagaaatctcatctatggttctaacaaagatgcgcaagactgcagaggagtttttagaattgcctgtcaagaatgcagttgttac 3147632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 8570905 - 8570866
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtgattc 286  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  8570905 cagatgtaaagaggttaattggaaggaagtatagtgattc 8570866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 8016309 - 8016393
Alignment:
Q  25 aatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcagg 109  Q
    ||||||||||| ||| |||| || || |||| ||||||||| ||||||  | |||||||||| |||||| |||| || |||||||    
T  8016309 aatgatcaagggaaccgaacgacgccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 8016393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 9323068 - 9323197
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||| |   |||| |||||||||||||||||| |||| || |||||  |||    
T  9323068 gagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctg 9323167  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    || |||||||   |||||||||||||||||    
T  9323168 ctactaaccctgaaaacactatctttggta 9323197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 9377547 - 9377676
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||| |   |||| |||||||||||||||||| |||| || |||||  |||    
T  9377547 gagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctg 9377646  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    || |||||||   |||||||||||||||||    
T  9377647 ctactaaccctgaaaacactatctttggta 9377676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 9335040 - 9335168
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||| |   |||| |||||||||| ||||||| |||| || |||||  |||    
T  9335040 gagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttga-tggtgatgctgctaagaatcaatctg 9335138  T
Q  113 cttctaacccaacaaacactatctttggta 142  Q
    || |||||||   |||||||||||||||||    
T  9335139 ctactaaccctgaaaacactatctttggta 9335168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 30775705 - 30775639
Alignment:
Q  388 tctgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgcagagaagtttttgga 454  Q
    ||||||| |||||||| |||||||||||||| ||||| ||| | ||||||||||||| || ||||||    
T  30775705 tctgtgccgaggaaatttcatcaatagtcctcacaaatatgagagagattgcagagatgtatttgga 30775639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 35133546 - 35133451
Alignment:
Q  19 attcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgct 114  Q
    |||||||| |||||| | |||| ||| || ||||||| | ||||||| ||| | |||||||||||||| |||||| |||| || ||||| ||||||    
T  35133546 attcacaacgatcaaagcaacaaaacaacaccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatcaagctgct 35133451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 28221045 - 28220951
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || |||||| ||||||||||||| ||| |||| ||||||||    
T  28221045 gagattattcacaatgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaatca 28220951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 42554191 - 42554276
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgc 98  Q
    ||||||||||||||||||||||| |||| ||| || ||||||||||||||||||||| || || ||||||||||||||||| ||||    
T  42554191 gagattattcacaatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgc 42554276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 28220402 - 28220349
Alignment:
Q  390 tgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgcagag 443  Q
    ||||| || ||||||||||| || || |||||||||||||||||||||||||||    
T  28220402 tgtgccgaagaaatctcatctatggttctaacaaagatgcgtgagattgcagag 28220349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 12257913 - 12258019
Alignment:
Q  8 gagcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    |||| ||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||| | ||||||||||||||||||||| |||| || |||||    
T  12257913 gagctgagatcattcacaacgatcaaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatca 12258012  T
Q  108 ggctgct 114  Q
     ||||||    
T  12258013 agctgct 12258019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 16656599 - 16656733
Alignment:
Q  8 gagcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    |||||||||| || |||||||| || ||||||||||| || ||||||||||||||||| ||| |||||||||||||||| |||||| |||| || |||||    
T  16656599 gagcagagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaagaatca 16656698  T
Q  108 ggctgcttctaacccaacaaacactatctttggta 142  Q
     | |||  ||||||||  |||||| ||||||||||    
T  16656699 agttgccgctaacccacaaaacaccatctttggta 16656733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 12244413 - 12244536
Alignment:
Q  19 attcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttcta 118  Q
    |||||||| ||||| || |||||||| || ||||||| ||||||||| ||||| ||||||||||| ||||||||| |||| |||||||| |||||| |||    
T  12244413 attcacaacgatcagggcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaagctgctgcta 12244512  T
Q  119 acccaacaaacactatctttggta 142  Q
    || |   ||||||| |||||||||    
T  12244513 actctcaaaacactgtctttggta 12244536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 43626419 - 43626333
Alignment:
Q  12 agagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgc 98  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||| |||| ||| | || |||||||||||||||||| ||||    
T  43626419 agagattatccacaatgaccaaggaaacagaactacaccttcttttgtttctttcactaaggaccaaaggttgattggtgatgctgc 43626333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 12235896 - 12235787
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctg 112  Q
    ||||| |||||||| |||||||| || ||||| || ||||||||||||||||| || ||  |||| ||||||||||||||| |||| || ||||| ||||    
T  12235896 gagatcattcacaacgatcaaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatcaagctg 12235797  T
Q  113 cttctaaccc 122  Q
    |||| |||||    
T  12235796 cttccaaccc 12235787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 14705555 - 14705432
Alignment:
Q  19 attcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttcta 118  Q
    |||||||| |||||||| || ||||| |||||||||||||||||||| || ||  ||||  |||||||||||||| |||| || ||||| |||||| | |    
T  14705555 attcacaacgatcaaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatcaagctgctgcca 14705456  T
Q  119 acccaacaaacactatctttggta 142  Q
    ||||   ||||||| |||||||||    
T  14705455 accctcgaaacactgtctttggta 14705432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 7543369 - 7543246
Alignment:
Q  19 attcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttcta 118  Q
    |||||||| || ||||| |||||||| || ||||||||||||||||| || ||  |||| |||||||| ||||||  ||| || ||||| |||||||| |    
T  7543369 attcacaacgaccaaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatcaagctgcttcca 7543270  T
Q  119 acccaacaaacactatctttggta 142  Q
    ||||   ||||||| |||||||||    
T  7543269 accctcaaaacactgtctttggta 7543246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 16661070 - 16661141
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttg 84  Q
    |||||||| ||||| ||| |||| |||| || ||| ||||||||||||||||||||||||| ||||||||||    
T  16661070 gagattatccacaacgatgaaggcaacaaaattacaccttcttttgttgcttttactgatgctcaaaggttg 16661141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 12529960 - 12529837
Alignment:
Q  19 attcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatcaggctgcttcta 118  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||||||||| ||  ||| || ||||||||| || |||| |||||||| ||| | ||||    
T  12529960 attcacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcagagattgattggtcatgctgccaaaaatcaagcttcctcta 12529861  T
Q  119 acccaacaaacactatctttggta 142  Q
    |||| || ||||||||||||||||    
T  12529860 accccaccaacactatctttggta 12529837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 43745919 - 43745843
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtga 92  Q
    ||||||||||||||||||||||| |||| ||| |||   ||||||||||||||||||||| || |||||||||| |||||    
T  43745919 gagattattcacaatgatcaaggcaacaaaacaact---tcttttgttgcttttactgatcatgaaaggttgataggtga 43745843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 483
Target Start/End: Complemental strand, 43745298 - 43745205
Alignment:
Q  390 tgtgctgaggaaatctcatcaatagtcctaacaaagatgcgtgagattgcagagaagtttttggagtcatctgtggagaatgcagttgttactg 483  Q
    ||||| || ||||||||||| ||  | ||||||||||||||||||||||||||||  |||||| | |   ||||  ||||||||||||||||||    
T  43745298 tgtgccgaagaaatctcatctatgattctaacaaagatgcgtgagattgcagagacatttttgcaattgcctgtcaagaatgcagttgttactg 43745205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 12529098 - 12529062
Alignment:
Q  247 cagatgcaaagaggttaattggaaggaaatatagtga 283  Q
    ||||||||||||||||||||||||| || ||||||||    
T  12529098 cagatgcaaagaggttaattggaagaaagtatagtga 12529062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 4677544 - 4677638
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    ||||||||| ||||||| ||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||| || |||| || |||||    
T  4677544 gagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaagaatca 4677638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 15596157 - 15596072
Alignment:
Q  13 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgc 98  Q
    |||||||| |||||||| ||||||||||||| ||| |||||||||||| |||| ||| ||||||||||||||||||||||| ||||    
T  15596157 gagattatccacaatgaccaaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgc 15596072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 34465251 - 34465346
Alignment:
Q  12 agagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgatcaaaggttgattggtgattctgcaaaaaatca 107  Q
    |||||||||| ||||||| ||||| |||| ||| || ||||||||||||||||||||| |||||||||| ||||| ||| || |||| || |||||    
T  34465251 agagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatca 34465346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 28911355 - 28911312
Alignment:
Q  70 gatgatcaaaggttgattggtgattctgcaaaaaatcaggctgc 113  Q
    |||||||||||||||||||||||| |||| || |||||||||||    
T  28911355 gatgatcaaaggttgattggtgatgctgctaagaatcaggctgc 28911312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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