View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3939_low_5 (Length: 338)
Name: NF3939_low_5
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 35973664 - 35973998
Alignment:
| Q |
6 |
atatacatcttcaaaa-ctgtaaattatcttgttcagtaatttatcttttgaaagtgcatttttaaaactacataaggtttggttttggagtgagctttt |
104 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35973664 |
atatacatcttaaaaaactgtaaattatcttgttcagtaatttatcttttgaaagtgcatttttaaaactacataaggtttggttttggagtgagctttt |
35973763 |
T |
|
| Q |
105 |
-aaactgaccaaactctaaataactgcaggtaccatatagactatatgattatacaagtctaataccatccgtaattaaggcacttctcatgtgtaacct |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35973764 |
taaactgaccaaactctaaataactgcaggtaccatatagactatatgattatacaagtctaataccatccgtaattaaggcacttctcatgtgtaacct |
35973863 |
T |
|
| Q |
204 |
cttggtcacataaatcatagtaatttgagtgttagagtgcataaggatacacgaccactatcggacaccatcgcgtcatgaatttcaggcataccaaccg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35973864 |
cttggtcacataaatcatagtaatttgagtgttagagtgcataaggatacacggccactatcggacaccatcgcgccatgaatttcaggcataccaacca |
35973963 |
T |
|
| Q |
304 |
gttatggtcttaaggaattgttcttccacatctct |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35973964 |
gttatggtcttaaggaattgttcttccacatctct |
35973998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University