View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_6 (Length: 334)
Name: NF3939_low_6
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 5604487 - 5604771
Alignment:
| Q |
17 |
agatatttcggaatcacaatagtcttcaataattttgcagaagctacgaagtgtagcttgtgtaagaagtttcaatattgtttaagctacaaaactaata |
116 |
Q |
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| T |
5604487 |
agatatttcggaatcacaatagtctacaataattttgcagaagctacgaagtgtagtttgtgcaagaagtttcaatattgtttaagctacaaaactaata |
5604586 |
T |
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| Q |
117 |
aagatagaaatttgatagaaaatgagtgatgtacataatatctataactaatttatttttnnnnnnnttatatgaactttctctcttttagtttaatgta |
216 |
Q |
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| T |
5604587 |
aagatagaaatttgatagaaaatgagtgatgtacataatatctataactaatttattttttaaaaaattatatgaactttctctcttttagtttaatgta |
5604686 |
T |
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| Q |
217 |
tttatttttagattaatcaattcttca------ttagttttgtttggtgtagtaattaactatatgttgcaatctagtactataa |
295 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604687 |
tttatttttagattaatcaattcttcattagttttagttttgtttggtgtagtaattaactatatgttgcaatctagtactataa |
5604771 |
T |
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