View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3939_low_9 (Length: 315)
Name: NF3939_low_9
Description: NF3939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3939_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 31726140 - 31725845
Alignment:
| Q |
19 |
agcttaacctccaacgcatcactgacataatccttagaaacttgaggagcctttgaaatctgtttcccaccaaagatgttatcagtgttcaaagatttta |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31726140 |
agcttaacctccaacgcatcactggcataatccttagaaacttgaggagcctttggaatctgtttcccaccaaagatgttatcagtgttcaaagatttta |
31726041 |
T |
|
| Q |
119 |
acataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcttccaaaactt |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31726040 |
acataaagttcatataacccttcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcctccaaaactt |
31725941 |
T |
|
| Q |
219 |
acgtgggcttctttttaaccttatgatcttcatttttctcccactcccttctaggtgcttgtgctgccttcttctcaagtattgcttaattccacc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31725940 |
acgtgggcttctttttaaccttatgatcttcatttttctcccactcccttctaggtgcttgtgctgccttcttctcaagtattgcttaattccacc |
31725845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 31711207 - 31711319
Alignment:
| Q |
118 |
aacataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcttccaaaact |
217 |
Q |
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||||||||||||||||| |||||| | |||||||||| ||||||||||||| | |||| |||||| ||| ||||| ||||| ||||||||||| | |
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| T |
31711207 |
aacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccc |
31711306 |
T |
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| Q |
218 |
tacgtgggcttct |
230 |
Q |
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||||||| ||||| |
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| T |
31711307 |
tacgtggacttct |
31711319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 31719308 - 31719420
Alignment:
| Q |
118 |
aacataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcttccaaaact |
217 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||| ||||||||||||| | |||| |||||| ||| ||||| ||||| ||||||||||| | |
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| T |
31719308 |
aacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccc |
31719407 |
T |
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| Q |
218 |
tacgtgggcttct |
230 |
Q |
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||||||| ||||| |
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| T |
31719408 |
tacgtggacttct |
31719420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 31721913 - 31722025
Alignment:
| Q |
118 |
aacataaagttcatataaccattcttaaaatttgtcaacattttcaatggtgatttaatcacccatctaagccttgggattgttttgatcttccaaaact |
217 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||| ||||||||||||| | |||| |||||| ||| ||||| ||||| ||||||||||| | |
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| T |
31721913 |
aacataaagttcatatacgtattcttgacttttgtcaacaatttcaatggtgatcttatcatccatcttagctttgggcttgttctgatcttccaatccc |
31722012 |
T |
|
| Q |
218 |
tacgtgggcttct |
230 |
Q |
| |
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||||||| ||||| |
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| T |
31722013 |
tacgtggacttct |
31722025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 46293876 - 46293763
Alignment:
| Q |
22 |
ttaacctccaacgcatcactgacataatccttagaaacttgaggagcctttgaaatctgtttcccaccaaagatgttatcagtgttcaaagattttaaca |
121 |
Q |
| |
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||||| || |||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
46293876 |
ttaacttcaaacgcatcactggcataatccttagaaacttgaggaacctttggaatctgtttccttacaaagatgttatcagcgttcaaagattttaaca |
46293777 |
T |
|
| Q |
122 |
taaagttcatataa |
135 |
Q |
| |
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|||||||||||||| |
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| T |
46293776 |
taaagttcatataa |
46293763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 48731802 - 48731697
Alignment:
| Q |
19 |
agcttaacctccaacgcatcactgacataatccttagaaacttgag-gagcctttgaaatctgtttcccaccaaagatgttatcagtgttcaaagatttt |
117 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||||| | ||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
48731802 |
agcttaacctcaaacacatcactagcataatccttagaaacttaaaagagcctttggaatctgtttccttccaaagatgttgtcagtgttcaaagatttt |
48731703 |
T |
|
| Q |
118 |
aacata |
123 |
Q |
| |
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|||||| |
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| T |
48731702 |
aacata |
48731697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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