View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3940_high_4 (Length: 273)
Name: NF3940_high_4
Description: NF3940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3940_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 48345071 - 48344815
Alignment:
| Q |
1 |
tgaaatgggttgcttcacttttttgagattgttgtaaatcttcaaagctcttgattttgatttgattaaggtatcttcatcgtttgcaatgatccttctc |
100 |
Q |
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| T |
48345071 |
tgaaatgggttgcttcacttttttgagattgttgtaaatcttcaacgctcttgattttgatttgattaaggtatcttcatcgtttgcaatgattcttctc |
48344972 |
T |
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| Q |
101 |
tctggaggaacggttgttttcaccggcttaggccttgaaggagcgaaacacgaaccacctcgtgatttggctttgtacattgattctgtttcggaggagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48344971 |
tctggaggaacggttgttttcaccggcttaggccttgaaggagcgaaacacgaaccacctcgtgatttggctttgtacattgattctgtttcggaggagg |
48344872 |
T |
|
| Q |
201 |
acgataataaaccacttgaatctgaagaacttgaagttgagctgaaaaacataacat |
257 |
Q |
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| T |
48344871 |
atgataataaaccacttgaatctgaagaacttgaagttgagctgaaaaacataacat |
48344815 |
T |
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