View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3940_high_5 (Length: 271)
Name: NF3940_high_5
Description: NF3940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3940_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 48345242 - 48345493
Alignment:
| Q |
1 |
ttcatctaaatcacgagatacattacataatggtgataaaagaacggtccgtttttacccggtgagtgtgattgttgatgaagataatcgagcttgtggt |
100 |
Q |
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| T |
48345242 |
ttcatctaaatcaagagataaattacacaatggtgataaaagaacggtccgtttttacccggtgagtgtgattgttgatgaagataatcgagcttgtggt |
48345341 |
T |
|
| Q |
101 |
cataaatatttgaatgaaggagttacaaagaagaatgaagaagttgtggacaagagtaagaaagaggaggaagttgctagagaatttttaacagagtacc |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48345342 |
cataaatatttgaataaaggagttacaaagaagaatgaagaagttgtggacaagagtaagaaagaggaggaagttgctagagaatttttaagagagtacc |
48345441 |
T |
|
| Q |
201 |
atcttaaccataagattttgagggatttttctatgaagaaaaatgaagaagt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48345442 |
atcttaaccataagattttgagggatttttctatgaagaaaaatgaagaagt |
48345493 |
T |
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