View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3940_high_7 (Length: 211)
Name: NF3940_high_7
Description: NF3940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3940_high_7 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 41556508 - 41556696
Alignment:
| Q |
23 |
catcaagcatcgacaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaatt |
122 |
Q |
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| T |
41556508 |
catcaagcatcgacaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagcagtggcagcactagctcctttgaacctgatccaatt |
41556607 |
T |
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| Q |
123 |
atagactcatacaactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatccaatcc |
211 |
Q |
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| T |
41556608 |
atagactcatacaactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatccaatcc |
41556696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 41589165 - 41589335
Alignment:
| Q |
35 |
acaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaattatagactcatac |
134 |
Q |
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| T |
41589165 |
acaaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatac |
41589264 |
T |
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| Q |
135 |
aactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatc |
205 |
Q |
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| T |
41589265 |
aactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatc |
41589335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 41570240 - 41570404
Alignment:
| Q |
37 |
aaaactacaactatgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaattatagactcatacaa |
136 |
Q |
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| T |
41570240 |
aaaactacaaatttgtgcatagccctgacatcagtgattatagtttcagcagtggtagcactagctcctttgaacttgaaccaattatagagacatacaa |
41570339 |
T |
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| Q |
137 |
ctataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaat |
204 |
Q |
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| T |
41570340 |
ctacaattacaacacctttccactcccaaatactcttccaattcctcc---aaactttgtttctcaat |
41570404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 41582725 - 41582806
Alignment:
| Q |
124 |
tagactcatacaactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatc |
205 |
Q |
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| T |
41582725 |
tagactcatacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatc |
41582806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 41579177 - 41579251
Alignment:
| Q |
50 |
tgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaattat |
124 |
Q |
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| T |
41579177 |
tgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat |
41579251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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