View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3940_low_1 (Length: 486)
Name: NF3940_low_1
Description: NF3940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3940_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 32597179 - 32596754
Alignment:
| Q |
1 |
tttcactatagaatggatagaatattgtcaccactacatagaagcttacgttataaaagtcaagaagtcaactaaaccaacaatcaattatagctataaa |
100 |
Q |
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| T |
32597179 |
tttcactatagaatggatagaatattgtcaccactacatagaagcttacgttataaaagtcaagaagtcaactaaaccaacaatcaattatagctataaa |
32597080 |
T |
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| Q |
101 |
gacacattagctaatatctttatttctttcctacaatctttacccttaatgccaacaaaggaagtttagagtgatacatcttatgtatacattgagcact |
200 |
Q |
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| T |
32597079 |
gacacattaactaatatctttatttctttcctacaatctttacccttaatgccaacaaaggaaatttagagtgatacatcttatgtatacattgagcact |
32596980 |
T |
|
| Q |
201 |
tgtacaaattgtaatctctccatttaactaggagagagggtggacaccttatacactattttataccacagactgagactacatttacaccctttcaagc |
300 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32596979 |
tgtacaaattgtaatttctccatgtaactaggagagagggtggacaccatatacactattttataccacagactgagactacatttacaccc-ttcaagc |
32596881 |
T |
|
| Q |
301 |
aactaaacaaggagagagggtgagaccgtagaatggggtttccagcaaacattatccaacttggtattgagtagacttgacatattttgcaatgtattct |
400 |
Q |
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| T |
32596880 |
aactaaacaaggagacagggtgagaccgtagaatggggtttccagcaaacattatccaacttggtattgagtagacatgacatattttgcaatgtattct |
32596781 |
T |
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| Q |
401 |
tcaagtcgaactcaaaatataacaacg |
427 |
Q |
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| T |
32596780 |
tcaagtcgaactcaaaatataacaacg |
32596754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 32578544 - 32578502
Alignment:
| Q |
60 |
tcaagaagtcaactaaaccaacaatcaattatagctataaaga |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32578544 |
tcaagaagtcaactaaaccaacaatcaattatagctatgaaga |
32578502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 32667189 - 32667147
Alignment:
| Q |
357 |
caacttggtattgagtagacttgacatattttgcaatgtattc |
399 |
Q |
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|||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
32667189 |
caactttgtattgtgtagacttgacatattttgtaatgtattc |
32667147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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