View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3940_low_2 (Length: 434)
Name: NF3940_low_2
Description: NF3940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3940_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 15056435 - 15056025
Alignment:
| Q |
16 |
acttatctaggcacaaacattagtagaactcttgcatcttgttttgttcctaatttgatctgtcaatcatacaaattagctttcactttagtctttatga |
115 |
Q |
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| T |
15056435 |
acttatctaggcacaaacattagtagaactcttgcatcttgttttgttcctaatttgatctgtcaatcatacaaattagctttcactttagtctttatga |
15056336 |
T |
|
| Q |
116 |
cattcaacagactggtgtaccgagtaaccctttgaattatgttttgtccaatggatttgccaactgcagggagtagagcggtatcaggaaggcacatcta |
215 |
Q |
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| T |
15056335 |
cattcaacagactggtgtaccgagtaaccctttgaattatgttttgtccaatggatttgccaactgcagggagtagagcggtatcaggaaggcacatcta |
15056236 |
T |
|
| Q |
216 |
gagctgttgttccaagccgtagatctactggtatgtgcacatcctgcttttaattgattttctctgcgaagttaaggcgcagatttggatccattgtatg |
315 |
Q |
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| T |
15056235 |
gagctgttgttccaagccgtagatctactggtatgtgtacatcctgcttttaattgattttctctgtgaagttaaggcgcagatttggatccattgtatg |
15056136 |
T |
|
| Q |
316 |
tttaattttaatgctttgttgttgtacttgagtatttaccttttaccgtgccatgtttctaataactggagttgattatcaatcttgaacaaaataatta |
415 |
Q |
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| T |
15056135 |
tttaattttaatgctttgttgttgtacttgagtatttaccttttaccgtgccatgtttctaataactggggttgattatcaatcttgaacaaaataatta |
15056036 |
T |
|
| Q |
416 |
aactgatgatg |
426 |
Q |
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| T |
15056035 |
aactgatgatg |
15056025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 108 - 272
Target Start/End: Original strand, 15010334 - 15010498
Alignment:
| Q |
108 |
ctttatgacattcaacagactggtgtaccgagtaaccctttgaattatgttttgtccaatggatttgccaactgcagggagtagagcggtatcaggaagg |
207 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||| | |||||||||| |
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| T |
15010334 |
ctttatgtcattcaatagactggtgtaccgagtaaccctttgaattttgttttgtccattggatctgccaactgcaggaagtagagcagcatcaggaagg |
15010433 |
T |
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| Q |
208 |
cacatctagagctgttgttccaagccgtagatctactggtatgtgcacatcctgcttttaattga |
272 |
Q |
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| T |
15010434 |
cacatctagagctgttgttccaagcagtagatctactggtatgtgtacatcatgtttttaattga |
15010498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 108 - 307
Target Start/End: Original strand, 14290318 - 14290517
Alignment:
| Q |
108 |
ctttatgacattcaacagactggtgtaccgagtaaccctttgaattatgttttgtccaatggatttgccaactgcagggagtagagcggtatcaggaagg |
207 |
Q |
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| T |
14290318 |
ctttatgtcactcaatagactggtgtactgagtaaccctttgaattttgttttgtccaatggatctgcaacctgcaggaagtagagcaggatcaggaagg |
14290417 |
T |
|
| Q |
208 |
cacatctagagctgttgttccaagccgtagatctactggtatgtgcacatcctgcttttaattgattttctctgcgaagttaaggcgcagatttggatcc |
307 |
Q |
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| T |
14290418 |
cacatctagagctaatgttccaagcactggatccactggtatttccacatcctgtttttaattgattttctttgtggagttgaggtgcagatttggatcc |
14290517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 15053311 - 15053430
Alignment:
| Q |
159 |
ttgtccaatggatttgccaactgcagggagtagagcggtatcaggaaggcacatctagagctgttgttccaagccgtagatctactggtatgtgcacatc |
258 |
Q |
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||||||| ||||| |||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
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| T |
15053311 |
ttgtccattggatctgccaattgcaggaagtagagcaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatc |
15053410 |
T |
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| Q |
259 |
ctgcttttaattgattttct |
278 |
Q |
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||| |||||||||||||||| |
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| T |
15053411 |
ctgtttttaattgattttct |
15053430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 14282990 - 14283096
Alignment:
| Q |
108 |
ctttatgacattcaacagactggtgtaccgagtaaccctttgaattatgttttgtccaatggatttgccaactgcagggagtagagcggtatcaggaagg |
207 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| || ||||||| |
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| T |
14282990 |
ctttatgtcattcaacagactggtgtactgagtaaccctttgaattttgttttgtccaatgaatctgccaactgcaggaagtagagcacaatgaggaagg |
14283089 |
T |
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| Q |
208 |
cacatct |
214 |
Q |
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||||||| |
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| T |
14283090 |
cacatct |
14283096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 15010701 - 15010767
Alignment:
| Q |
357 |
tttaccgtgccatgtttctaataactggagttgattatcaatcttgaacaaaataattaaactgatgatg |
426 |
Q |
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| T |
15010701 |
tttactgtgccatgtttctaa---ctggagttgattatcaatcttgaacaaactaattaaactgatgatg |
15010767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 14742237 - 14742111
Alignment:
| Q |
181 |
gcagggagtagagcggtatcaggaaggcacatctagagctgttgttccaagccgtagatctactggtatgtgcacatcctgcttttaattgattttctct |
280 |
Q |
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| T |
14742237 |
gcaggaagtaaagcagcatcaggaaggcacatctggagcatttgatccaagcagtagatctactggtatgcacacatcctatttttaattgagtttcttt |
14742138 |
T |
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| Q |
281 |
gcgaagttaaggcgcagatttggatcc |
307 |
Q |
| |
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| |||| ||| |||||||||||||| |
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| T |
14742137 |
atggagttgaggtgcagatttggatcc |
14742111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 15053628 - 15053681
Alignment:
| Q |
355 |
cttttaccgtgccatgtttctaataactggagttgattatcaatcttgaacaaaata |
411 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15053628 |
cttttactgtgccatgtttctaa---ctggagttgattatcaatcttgaacaaaata |
15053681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 14290664 - 14290711
Alignment:
| Q |
378 |
taactggagttgattatcaatcttgaacaaaataattaaactgatgatg |
426 |
Q |
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| T |
14290664 |
taactggagttgattatcaatcttgaac-aaataactaaactgatgatg |
14290711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 14283362 - 14283429
Alignment:
| Q |
355 |
cttttaccgtgccatgtttctaataactggagttgattatcaatcttgaacaaaataattaaactgatgatg |
426 |
Q |
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| T |
14283362 |
cttttactgtgccatttttctaa---ctggagttgattatcgatcttgaac-aaataactaaactgatgatg |
14283429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 14741927 - 14741882
Alignment:
| Q |
381 |
ctggagttgattatcaatcttgaacaaaataattaaactgatgatg |
426 |
Q |
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| T |
14741927 |
ctggagttgattatcaatcttgaacaatataactgaactgacgatg |
14741882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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