View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3940_low_3 (Length: 380)
Name: NF3940_low_3
Description: NF3940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3940_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 43927951 - 43927792
Alignment:
| Q |
18 |
ttttactgggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgttcttgttgttgggtctgggaattctggtatggaa |
117 |
Q |
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| T |
43927951 |
ttttactgggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgttcttgttgttgggtctgggaattctggtatggaa |
43927852 |
T |
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| Q |
118 |
attgcattggatcttgttaaccatggtgcaaaaacttccattgttgttcgaagcaaggta |
177 |
Q |
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| T |
43927851 |
attgcattggatcttgttaaccatggtgcaaaaacttccattgttgttcgaagcaaggta |
43927792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 43927727 - 43927611
Alignment:
| Q |
242 |
aagatacacatagacacacatgaaatttaaaattgttaggtaatttaattatctcatcacacttatacctaccaactcaccaactctgtatttgttatga |
341 |
Q |
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| T |
43927727 |
aagatacacatagacacacatcaaatttaaaattgttaggtaatttaattatctcatcacacttatacctaccaactcaccaactctgtatttgttatga |
43927628 |
T |
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| Q |
342 |
aacatatcgatgattga |
358 |
Q |
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| T |
43927627 |
aacatatcgatgattga |
43927611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 43939853 - 43939756
Alignment:
| Q |
25 |
gggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgttcttgttgttgggtctgggaattctggtatggaaattgc |
122 |
Q |
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| T |
43939853 |
gggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgttgttggttctggtaattctggtatggagattgc |
43939756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 15608180 - 15608293
Alignment:
| Q |
24 |
tgggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatg----aacatgttcttgttgttgggtctgggaattctggtatggaaat |
119 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
15608180 |
tggggaagtgattcattcaactgggtttaagaatgagaaagagtttaaagatgaattaacatgttctttttgttggatctgggaattctggcatggaaac |
15608279 |
T |
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| Q |
120 |
tgcattggatcttg |
133 |
Q |
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||| |||||||||| |
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| T |
15608280 |
tgctttggatcttg |
15608293 |
T |
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