View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_1 (Length: 589)
Name: NF3941_high_1
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 208 - 576
Target Start/End: Complemental strand, 46901506 - 46901138
Alignment:
| Q |
208 |
gcccacgttttcattgagcctagcagccgcagcaacagaagcagctacaccaccaggagtagcagtagcatcaggattattcctcatctcagcactagcc |
307 |
Q |
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| T |
46901506 |
gcccacgttttcattgagcctagcagccgcagcaacagaagcagctacaccaccaggagtagcagtagcatcaggattattcctcatctcagcactagcc |
46901407 |
T |
|
| Q |
308 |
accccagcagcatcttgccttgtcgccgccttatcagctggcagcttcgctgttgctccggtcagaacatctcccatcttaatcttctcctcctcacgtt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46901406 |
accccagcagcatcttgccttgtcgccgccttatcagctggcagcttcgctgttgctccggtcagaacatctcccatcttaatcttctcctcctcacgtt |
46901307 |
T |
|
| Q |
408 |
gacactcagcattgaaagctgctgcagattgagccattgaagccaaacctcccggggttataatattactccccgtagctctcacctccgccgcttgtat |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46901306 |
gacactcagcattgaaagctgctgcagattgagccattgaagccaaacctcccggtgttataacattactccccgtagctctcacctccgccgcttgtat |
46901207 |
T |
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| Q |
508 |
cgcagaggcgtcactctgttcaaccggcttgtcacccaccgtgtgggccgtcgcctctagtgcctctcc |
576 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46901206 |
cgcagaggcgtcactctgttccaccggcttgtcgcccaccgtgtgggccgtcgcctctagtgcctctcc |
46901138 |
T |
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