View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_10 (Length: 433)
Name: NF3941_high_10
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_10 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 25507720 - 25508102
Alignment:
| Q |
21 |
tgggtgattgatatattcaaatatcaagacaatcttttggataaagtattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttc |
120 |
Q |
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| T |
25507720 |
tgggtgattgatatattcaaatatcaagacaatcttttggataaagtattgaagatcacatgcctagatttgatttgactcagaagctattaagatcttc |
25507819 |
T |
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| Q |
121 |
aaagtactaagaagtgattccattggatttaataaccatcgatcgaaggtatagatgaaccatgtaatatgatatttaaccatcttcatgatagcaattt |
220 |
Q |
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| T |
25507820 |
aaagtacaaagaagtgattccattggatttaataaccatcgatcgaaggtatagatgaaccatgtaatatgatatttaaccatcttcatgatagcaattt |
25507919 |
T |
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| Q |
221 |
tatatctttattttagccatgtttccactgatccatttttgtccctcgacgatatcctatttcataatattctccacatgaaaactgaaacttttaaagg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
25507920 |
tatatctttattttagccatgtttccactgatccatttttgtccctcgacaatatcctatttcaaaatattctccacatgaaaactggaacttttaaagg |
25508019 |
T |
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| Q |
321 |
aattaaaccattccaaactgctgcaagatcccttgaatcatcgactacaaattctccttgaatcgatgcataaactactttta |
403 |
Q |
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| T |
25508020 |
aattaaaccattccaaactgctgcaagatcccttgaatcatcgactacaaattctcctagaatcgatgcataaactactttta |
25508102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 4388218 - 4388317
Alignment:
| Q |
28 |
ttgatatattcaaatatcaagacaatcttttggataaagtattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttcaaagtac |
127 |
Q |
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| T |
4388218 |
ttgatatattcaaatgtgaagacaatcatttggataaagtatttaaaatcacgtgcctagctctgatttggctcgaaatcacttaagatcttcaaagtac |
4388317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 13335229 - 13335352
Alignment:
| Q |
137 |
attccattggatttaataaccatcgatcgaaggtatagatgaa-ccatgtaatatgatatttaaccatcttcatgatagcaattttatatctttatttta |
235 |
Q |
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| T |
13335229 |
attccattggatttaataaccattgattgcaagtgtaaatgaatccatgtaatctgctatttaaccatctccaagatagcaattttatttcttc----ta |
13335324 |
T |
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| Q |
236 |
gccatgtttccactgatccatttttgtc |
263 |
Q |
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| T |
13335325 |
gccatgattccaccgatccatttttgtc |
13335352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 13335643 - 13335710
Alignment:
| Q |
292 |
ctccacatgaaaactgaaacttttaaaggaattaaaccattccaaactgctgcaagatcccttgaatc |
359 |
Q |
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| T |
13335643 |
ctccacacaaaaactgaaactttcaatggaattaaaccattcctcaccgcagcaagatcccttgaatc |
13335710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 10497368 - 10497455
Alignment:
| Q |
137 |
attccattggatttaataaccatcgatcgaaggtatagatgaa-ccatgtaatatgatatttaaccatcttcatgatagcaattttat |
223 |
Q |
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| T |
10497368 |
attccattggatataataaccattgattgcaagtgtaaatgaatccatgtaatctgctatttaacgatctccaagatagcaattttat |
10497455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 18263 - 18336
Alignment:
| Q |
67 |
tattgaagatcatatgcctagctttgatttggctcagaagctattaagatcttcaaagtactaagaagtgattc |
140 |
Q |
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||||||||||||| || | | ||| ||||| ||| ||||||||||||||||||||||||| ||||| |||||| |
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| T |
18263 |
tattgaagatcatgtggccatattttatttgactcggaagctattaagatcttcaaagtacaaagaaatgattc |
18336 |
T |
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