View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_12 (Length: 424)
Name: NF3941_high_12
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 32961220 - 32960832
Alignment:
| Q |
9 |
caacaatatcactagaccaatcccaaaccacctagccataaagctctctctttagtctcaatgaatctttgaaccacaaagagaaaaatgtccctagccc |
108 |
Q |
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| T |
32961220 |
caacaaaatcactagaccaatcccaatccacctagccataaagctctctctttagtctcaatgaatctttgaaccacaaagagaaaaatgtccctagccc |
32961121 |
T |
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| Q |
109 |
caagtgagaatgtgagataaagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttatcataacaattatt |
208 |
Q |
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| T |
32961120 |
caagtgagaatgtgagataaagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttatcataacaattatt |
32961021 |
T |
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| Q |
209 |
gctttatttgtttaatgaataatgtactatatatggtagaattggtacaatatgttgttataatgactgtcttattagttcaacatctttgcatgcatgc |
308 |
Q |
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| T |
32961020 |
gctttatttgtttaatgaataatgtactatatatggtagaattggtacaatatgttgttataatgactggcttatttgttcaacatctttgcatgcatgc |
32960921 |
T |
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| Q |
309 |
aagtgaatttcttcacgataccc----acctggcatctcggtggacgatataatttactaaaacttattattatagtggtagtaaatca |
393 |
Q |
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| T |
32960920 |
aagtgaatttcttcacgatacccacctacctggcatctcggtggacgatataatttactaaaacttattattatagtggtagtaaatca |
32960832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 7715736 - 7715803
Alignment:
| Q |
128 |
aagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttat |
195 |
Q |
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| T |
7715736 |
aagacaaacattccagttgtatgttgttgcttttgaggaatgcaattttattcgttcccaaagtttat |
7715803 |
T |
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