View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_14 (Length: 407)
Name: NF3941_high_14
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 151 - 397
Target Start/End: Original strand, 34236653 - 34236900
Alignment:
| Q |
151 |
ttgaaaagtgttttaaattattaagtaatattagtatttgattgacttctaatatttccaaattcttccctcaatttt-ttcttaattgcttaattattg |
249 |
Q |
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| T |
34236653 |
ttgaaaagtgttttaaattattatgtaatattagtatttgattgacttctaatatttccaaattcttccctcaatttttttcttaattgcttaattattg |
34236752 |
T |
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| Q |
250 |
tctaagcaaaattatattaaaagaaaataaaggtaaccagatataccgtgttcgaattcagctatgtaaatgcaataaggttaaacattttgaagaagag |
349 |
Q |
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| T |
34236753 |
tctaagcaaaattatattaaaagaaaataaaggtaaccagatataccgtgttcgaattcagctatgtaaatgcaataaggttaaacattttgaagaagag |
34236852 |
T |
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| Q |
350 |
tttcgccactcactgtggtcatatttagttttaagaattaactctgtg |
397 |
Q |
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| T |
34236853 |
tttcaccacccagtgtggtcatatttagttctaagaattaactctgtg |
34236900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 34236610 - 34236652
Alignment:
| Q |
27 |
agaaatatttgacgtattcaaacataaatttacataattgtat |
69 |
Q |
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| T |
34236610 |
agaaatatttgacggattcaaacataaatttacataattgtat |
34236652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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