View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3941_high_23 (Length: 359)
Name: NF3941_high_23
Description: NF3941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3941_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 39758018 - 39757756
Alignment:
| Q |
17 |
cactcccaaataatagtctcacaagtgtgccgtttaagcggttacataaactcaaataagtcaatccacgcatacgaattcagagattgaacacataaac |
116 |
Q |
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| T |
39758018 |
cactcccaaataatagtctcacaagtgtgccgtttaagcggttacataaactcaaataagtcaatccacgcataagaattcagagattgaacacataaac |
39757919 |
T |
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| Q |
117 |
agaatgctatgaaacaaacaagagaatggtgaaactgaacaaaccttagccacagcagcttgccttgatcttactgacctagacttatgtgaaaaagaat |
216 |
Q |
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| T |
39757918 |
agaatgatatgaaacaaacaagagaatggtgaaactgaacaaaccttagccacagcagcttgccttgatcttactgacctagacttatgtgaaaaagaat |
39757819 |
T |
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| Q |
217 |
cagcatagcgtggaatcccatcatagaaatcatcattcctagttcctgcagcaacactaacag |
279 |
Q |
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| T |
39757818 |
cagcatagcgtggaatcccatcatagaaatcatcattcctagttcctgcagaaacactaacag |
39757756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 39757727 - 39757680
Alignment:
| Q |
305 |
actatccacaccctcctttgcacttgacaaatcactggtatgcctatg |
352 |
Q |
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| T |
39757727 |
actatccacaccctcctttgcacttgtcaaatcactggtatgcttatg |
39757680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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